List of works - Claudio Angione

A Hybrid Flux Balance Analysis and Machine Learning Pipeline Elucidates Metabolic Adaptation in Cyanobacteria

scientific article published on 18 November 2020

A Hybrid of Metabolic Flux Analysis and Bayesian Factor Modeling for Multiomic Temporal Pathway Activation.

scientific article published on 9 April 2015

A design automation framework for computational bioenergetics in biological networks.

scientific article published in October 2013

A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth

scientific article published on 16 July 2020

Bioremediation in marine ecosystems: a computational study combining ecological modeling and flux balance analysis.

scientific article published on 12 September 2014

Bose–Einstein condensation in satisfiability problems

CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design

scientific article published on 30 November 2018

Design and strain selection criteria for bacterial communication networks

Discovering Essential Multiple Gene Effects through Large Scale Optimization: an Application to Human Cancer Metabolism

scientific article published on 02 April 2020

Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis

scientific article

Erratum: Predictive analytics of environmental adaptability in multi-omic network models

scientific article published on 20 May 2016

Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production

scientific article published on 05 September 2021

Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine

scientific article published on 09 June 2019

In silico engineering of metabolism reveals new biomarkers for increased biosurfactant production

scientific article published on 17 December 2018

Integrating splice-isoform expression into genome-scale models characterizes breast cancer metabolism.

scientific article published on 8 September 2017

Machine and deep learning meet genome-scale metabolic modeling

scientific article published on 11 July 2019

Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

scientific article

Modelling pyruvate dehydrogenase under hypoxia and its role in cancer metabolism.

scientific article published on 25 October 2017

Multi objective design for bacterial communication networks

scholarly article published June 2013

Multi-Target Analysis and Design of Mitochondrial Metabolism.

scientific article published on 16 September 2015

Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling

Multiplex methods provide effective integration of multi-omic data in genome-scale models

scientific article

Optimization of Multi-Omic Genome-Scale Models: Methodologies, Hands-on Tutorial, and Perspectives.

scientific article published in January 2018

Pareto epsilon-dominance and identifiable solutions for BioCAD modeling

Pareto optimality in organelle energy metabolism analysis

scientific article published in July 2013

Predictive analytics of environmental adaptability in multi-omic network models.

scientific article

Robust design of microbial strains.

scientific article published on 7 October 2012

Satisfiability by Maxwell-Boltzmann and Bose-Einstein Statistical Distributions

Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling.

scientific article published on 30 May 2017

Social dynamics modeling of chrono-nutrition

scientific article published on 30 January 2019

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses

scientific article published in 2023

The poly-omics of ageing through individual-based metabolic modelling

scientific article published on 20 November 2018

Whole‐genome sequencing and genome‐scale metabolic modeling of <i>Chromohalobacter canadensis</i> 85B to explore its salt tolerance and biotechnological use

scientific article published in 2022

List of works by Claudio Angione

A Hybrid Flux Balance Analysis and Machine Learning Pipeline Elucidates Metabolic Adaptation in Cyanobacteria

A Hybrid of Metabolic Flux Analysis and Bayesian Factor Modeling for Multiomic Temporal Pathway Activation.

A design automation framework for computational bioenergetics in biological networks.

A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth

Bioremediation in marine ecosystems: a computational study combining ecological modeling and flux balance analysis.

Bose–Einstein condensation in satisfiability problems

CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design

Design and strain selection criteria for bacterial communication networks

Discovering Essential Multiple Gene Effects through Large Scale Optimization: an Application to Human Cancer Metabolism

Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis

Erratum: Predictive analytics of environmental adaptability in multi-omic network models

Genome-scale metabolic modelling of SARS-CoV-2 in cancer cells reveals an increased shift to glycolytic energy production

Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine

In silico engineering of metabolism reveals new biomarkers for increased biosurfactant production

Integrating splice-isoform expression into genome-scale models characterizes breast cancer metabolism.

Machine and deep learning meet genome-scale metabolic modeling

Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Modelling pyruvate dehydrogenase under hypoxia and its role in cancer metabolism.

Multi objective design for bacterial communication networks

Multi-Target Analysis and Design of Mitochondrial Metabolism.

Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling

Multiplex methods provide effective integration of multi-omic data in genome-scale models

Optimization of Multi-Omic Genome-Scale Models: Methodologies, Hands-on Tutorial, and Perspectives.

Pareto epsilon-dominance and identifiable solutions for BioCAD modeling

Pareto optimality in organelle energy metabolism analysis

Predictive analytics of environmental adaptability in multi-omic network models.

Robust design of microbial strains.

Satisfiability by Maxwell-Boltzmann and Bose-Einstein Statistical Distributions

Seeing the wood for the trees: a forest of methods for optimization and omic-network integration in metabolic modelling.

Social dynamics modeling of chrono-nutrition

Ten quick tips for avoiding pitfalls in multi-omics data integration analyses

The poly-omics of ageing through individual-based metabolic modelling

Whole‐genome sequencing and genome‐scale metabolic modeling of <i>Chromohalobacter canadensis</i> 85B to explore its salt tolerance and biotechnological use