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List of works by Trent R. Northen

"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria

scientific article

A High-Throughput Mass Spectrometric Enzyme Activity Assay Enabling the Discovery of Cytochrome P450 Biocatalysts

scientific article published on 13 June 2019

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

scientific article

A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology

scientific article published on 12 March 2021

A nanostructure-initiator mass spectrometry-based enzyme activity assay

scientific article

A robust gene-stacking method utilizing yeast assembly for plant synthetic biology

scientific article

Acoustic deposition with NIMS as a high-throughput enzyme activity assay

scientific article

Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry

scientific article published on 7 January 2016

Bacteria increase arid-land soil surface temperature through the production of sunscreens

scientific article

Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism

scientific article published on 20 April 2016

Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition

scientific article published on 15 March 2016

Bioenergy Underground: Challenges and opportunities for phenotyping roots and the microbiome for sustainable bioenergy crop production

scientific article published on 11 February 2022

CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria

scientific article published on 14 October 2019

Calcifying cyanobacteria--the potential of biomineralization for carbon capture and storage

scientific article published on 22 April 2010

Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust

scientific article published on 17 December 2019

Clathrate nanostructures for mass spectrometry

scientific article

Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.

scientific article

Comprehensive in Vitro Analysis of Acyltransferase Domain Exchanges in Modular Polyketide Synthases and Its Application for Short-Chain Ketone Production.

scientific article published on 22 August 2016

Conserved features of cancer cells define their sensitivity to HAMLET-induced death; c-Myc and glycolysis

scientific article

Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.

scientific article published on 22 December 2017

Cooking shapes the structure and function of the gut microbiome

scientific article published on 30 September 2019

Dealing with the unknown: metabolomics and metabolite atlases

scientific article

Decrypting bacterial polyphenol metabolism in an anoxic wetland soil

scientific article published on 29 April 2021

Drought and plant litter chemistry alter microbial gene expression and metabolite production

scientific article published on 22 May 2020

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

scientific article

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

scientific article published on 19 March 2018

Encoding substrates with mass tags to resolve stereospecific reactions using Nimzyme

scientific article

Enzyme promiscuity shapes adaptation to novel growth substrates

scientific article published on 08 April 2019

Enzyme promiscuity shapes evolutionary innovation and optimization

article

Exometabolite niche partitioning among sympatric soil bacteria

scientific article

Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism

scientific article published on 17 February 2016

Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment

scientific article published on 4 April 2015

Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (D2O) Stable Isotope Probing

scientific article published on 9 January 2017

From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis

scientific article published on 11 April 2013

Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere

scientific article published on 21 November 2019

Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.

scientific article

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

scientific article published on 03 December 2021

Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee

scientific article

High surface area of porous silicon drives desorption of intact molecules

scientific article

High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production

scientific article

High throughput screening of enzyme activity with mass spectrometry imaging

scientific article

High-throughput platforms for metabolomics

scientific article

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

scientific article published on 30 October 2019

Improved genome annotation through untargeted detection of pathway-specific metabolites

scientific article

Insulator Nanostructure Desorption Ionization Mass Spectrometry

scientific article published on 06 August 2018

Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust

scientific article

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

scientific article

Learning representations of microbe-metabolite interactions

scientific article published on 04 November 2019

Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning

scientific article published on 24 May 2019

Light-directed movement of polymer microstructures

scientific article published in May 2005

Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae

scientific article

Lipids as tumoricidal components of human α-lactalbumin made lethal to tumor cells (HAMLET): unique and shared effects on signaling and death

scientific article published on 29 April 2013

Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics

scientific article published on 18 November 2021

Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population

scientific article published on 10 October 2012

Mass spectrometry based metabolomics and enzymatic assays for functional genomics

scientific article published on 18 August 2009

Mass spectrometry imaging for in situ kinetic histochemistry

scientific article published on January 2013

Mass spectrometry imaging–based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme

scientific article published in 2023

Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging

scientific article

Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms

scientific article published on 20 May 2019

Metabolic footprinting of mutant libraries to map metabolite utilization to genotype

scientific article

Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS).

scientific article

Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling

scientific article published on 14 October 2010

Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics

scientific article published on 12 March 2013

Metabolome-proteome differentiation coupled to microbial divergence

scientific article

Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry

scientific article

Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules

scientific article

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

scientific article published on 24 January 2019

Multiple ionization mass spectrometry strategy used to reveal the complexity of metabolomics

scientific article

Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity

scientific article

Nanostructure imaging mass spectrometry: the role of fluorocarbons in metabolite analysis and yoctomole level sensitivity

scientific article

Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis

scientific article published on April 2009

Nanostructure-initiator mass spectrometry: a protocol for preparing and applying NIMS surfaces for high-sensitivity mass analysis

scientific article

New insight into the role of MMP14 in metabolic balance

scientific article published on 13 July 2016

Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism

scientific article published on 29 November 2021

OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

scientific article

OpenMSI: a high-performance web-based platform for mass spectrometry imaging

scientific article

Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry

scientific article

Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry

scientific article

Probing the active fraction of soil microbiomes using BONCAT-FACS

scientific article published on 24 June 2019

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

scientific article

Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS).

scientific article published on 12 May 2014

Rapid screening of fatty acids using nanostructure-initiator mass spectrometry.

scientific article published in May 2010

Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga

scientific article published on 20 February 2019

Resolving brain regions using nanostructure initiator mass spectrometry imaging of phospholipids

scientific article published on 27 April 2012

Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming

scientific article published on 27 September 2013

SIMILE enables alignment of tandem mass spectra with statistical significance

scientific article published on 06 May 2022

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

scientific article (publication date: 9 August 2016)

Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES

scientific article published on 19 December 2020

Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses

scientific article

Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific.

scientific article published on 5 June 2013

Synthesis and characterization of peptide grafted porous polymer microstructures

scientific article

The lethal cargo of Myxococcus xanthus outer membrane vesicles

scientific article

Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges

scientific article

Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach

scientific article

Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.

scientific article published on 21 September 2011

Versatile synthesis of probes for high-throughput enzyme activity screening

scientific article

Widespread adenine N6-methylation of active genes in fungi.

scientific article

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