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List of works by Abdullah Kahraman

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

scientific article published on 05 February 2020

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.

scientific article

Cross-link guided molecular modeling with ROSETTA

scientific article

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances

scientific article

Global analysis of protein structural changes in complex proteomes

scientific article published on 14 September 2014

Heme proteins--diversity in structural characteristics, function, and folding

scientific article published in August 2010

MTPpilot: An Interactive Software for Visualization of Next-Generation Sequencing Results in Molecular Tumor Boards

scientific article published in 2022

Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry

scientific article

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

scientific article

On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins

scientific article

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

scientific article published on 05 February 2020

PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics.

scientific article

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

scientific article

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

scientific article

Shape variation in protein binding pockets and their ligands

scientific article

Spin trapping combined with quantitative mass spectrometry defines free radical redistribution within the oxidized hemoglobin:haptoglobin complex

scientific article published on 28 April 2015

Statistical methods for detecting differentially methylated loci and regions

scientific article published on 16 September 2014

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

scientific article

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

Tracing Clonal Dynamics Reveals that Two- and Three-dimensional Patient-derived Cell Models Capture Tumor Heterogeneity of Clear Cell Renal Cell Carcinoma

scientific article published on 29 June 2019

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.

scientific article published on 20 November 2007

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints

scientific article published on 8 May 2015

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