List of works - Pavel Volynsky

Adaptable Lipid Matrix Promotes Protein-Protein Association in Membranes

scientific article published on 18 August 2015

Adaptation of a membrane-active peptide to heterogeneous environment. I. Structural plasticity of the peptide

scientific article

Adaptation of a membrane-active peptide to heterogeneous environment. II. The role of mosaic nature of the membrane surface

scientific article

Association of transmembrane helices: what determines assembling of a dimer?

scientific article

Computer simulations and modeling-assisted ToxR screening in deciphering 3D structures of transmembrane alpha-helical dimers: ephrin receptor A1.

scientific article published on 12 March 2010

Computer simulations of membrane-lytic peptides: perspectives in drug design

scientific article published on 01 April 2007

Cyclopentane rings in hydrophobic chains of a phospholipid enhance the bilayer stability to electric breakdown

scientific article published on 01 April 2020

Development of the force field parameters for phosphoimidazole and phosphohistidine.

scientific article

Effect of lipid composition on the "membrane response" induced by a fusion peptide

scientific article published on 01 November 2005

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin.

scientific article

HER2 Transmembrane Domain Dimerization Coupled with Self-Association of Membrane-Embedded Cytoplasmic Juxtamembrane Regions

scientific article

Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

scientific article published on 01 November 2005

Interaction of cardiotoxin A5 with a membrane: role of conformational heterogeneity and hydrophilic properties

scientific article

Left-Handed Dimer of EphA2 Transmembrane Domain: Helix Packing Diversity among Receptor Tyrosine Kinases

scientific article

Liquid but durable: molecular dynamics simulations explain the unique properties of archaeal-like membranes

scientific article

Monte Carlo simulations of voltage-driven translocation of a signal sequence

scientific article published on 01 August 2002

Multistate organization of transmembrane helical protein dimers governed by the host membrane

scientific article published on 23 August 2012

N-terminal amphipathic helix as a trigger of hemolytic activity in antimicrobial peptides: a case study in latarcins

scientific article

PREDDIMER: a web server for prediction of transmembrane helical dimers

scientific article published on 7 November 2013

Pore formation in lipid membrane I: Continuous reversible trajectory from intact bilayer through hydrophobic defect to transversal pore

scientific article published on 22 September 2017

Pore formation in lipid membrane II: Energy landscape under external stress.

scientific article published on 2 October 2017

Pyrenemethyl ara-uridine-2'-carbamate: a strong interstrand excimer in the major groove of a DNA duplex.

scientific article published in September 2003

Role of dimerization efficiency of transmembrane domains in activation of fibroblast growth factor receptor 3.

scientific article published on 23 May 2013

Secretory phospholipase A2 activity in blood serum: the challenge to sense

scientific article published on 18 October 2014

Spatial Structure and pH-dependent Conformational Diversity of Dimeric Transmembrane Domain of the Receptor Tyrosine Kinase EphA1

scientific article

Spatial structure and activity mechanism of a novel spider antimicrobial peptide

scientific article

Structure elucidation of dimeric transmembrane domains of bitopic proteins

scientific article

Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.

scientific article

The role of chain rigidity in lipid self-association: comparative study of dihexanoyl- and disorbyl-phosphatidylcholines

scientific article published on 14 December 2011

Three-dimensional structure/hydrophobicity of latarcins specifies their mode of membrane activity

scientific article

Unique dimeric structure of BNip3 transmembrane domain suggests membrane permeabilization as a cell death trigger

scientific article

List of works by Pavel Volynsky

Adaptable Lipid Matrix Promotes Protein-Protein Association in Membranes

Adaptation of a membrane-active peptide to heterogeneous environment. I. Structural plasticity of the peptide

Adaptation of a membrane-active peptide to heterogeneous environment. II. The role of mosaic nature of the membrane surface

Association of transmembrane helices: what determines assembling of a dimer?

Computer simulations and modeling-assisted ToxR screening in deciphering 3D structures of transmembrane alpha-helical dimers: ephrin receptor A1.

Computer simulations of membrane-lytic peptides: perspectives in drug design

Cyclopentane rings in hydrophobic chains of a phospholipid enhance the bilayer stability to electric breakdown

Development of the force field parameters for phosphoimidazole and phosphohistidine.

Effect of lipid composition on the "membrane response" induced by a fusion peptide

Factors important for fusogenic activity of peptides: molecular modeling study of analogs of fusion peptide of influenza virus hemagglutinin.

HER2 Transmembrane Domain Dimerization Coupled with Self-Association of Membrane-Embedded Cytoplasmic Juxtamembrane Regions

Helix Interactions in Membranes: Lessons from Unrestrained Monte Carlo Simulations

Interaction of cardiotoxin A5 with a membrane: role of conformational heterogeneity and hydrophilic properties

Left-Handed Dimer of EphA2 Transmembrane Domain: Helix Packing Diversity among Receptor Tyrosine Kinases

Liquid but durable: molecular dynamics simulations explain the unique properties of archaeal-like membranes

Monte Carlo simulations of voltage-driven translocation of a signal sequence

Multistate organization of transmembrane helical protein dimers governed by the host membrane

N-terminal amphipathic helix as a trigger of hemolytic activity in antimicrobial peptides: a case study in latarcins

PREDDIMER: a web server for prediction of transmembrane helical dimers

Pore formation in lipid membrane I: Continuous reversible trajectory from intact bilayer through hydrophobic defect to transversal pore

Pore formation in lipid membrane II: Energy landscape under external stress.

Pyrenemethyl ara-uridine-2'-carbamate: a strong interstrand excimer in the major groove of a DNA duplex.

Role of dimerization efficiency of transmembrane domains in activation of fibroblast growth factor receptor 3.

Secretory phospholipase A2 activity in blood serum: the challenge to sense

Spatial Structure and pH-dependent Conformational Diversity of Dimeric Transmembrane Domain of the Receptor Tyrosine Kinase EphA1

Spatial structure and activity mechanism of a novel spider antimicrobial peptide

Structure elucidation of dimeric transmembrane domains of bitopic proteins

Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.

The role of chain rigidity in lipid self-association: comparative study of dihexanoyl- and disorbyl-phosphatidylcholines

Three-dimensional structure/hydrophobicity of latarcins specifies their mode of membrane activity

Unique dimeric structure of BNip3 transmembrane domain suggests membrane permeabilization as a cell death trigger