List of works - Mitchel J Doktycz

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

scientific article (publication date: 2016)

A comparison of hybridization efficiency between flat glass and channel glass solid supports

scientific article published on 06 September 2007

A general system for studying protein-protein interactions in Gram-negative bacteria

scientific article published in July 2008

AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces.

scientific article

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

scientific article

Actuatable Membranes Based on Polypyrrole-Coated Vertically Aligned Carbon Nanofibers

scientific article published on 01 February 2008

An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.

scientific article published on 19 August 2009

An optimized nanoparticle separator enabled by electron beam induced deposition

scientific article published on 30 March 2010

Application of AFM in understanding biomineral formation in diatoms.

scientific article published on 06 December 2007

Atomic force microscopy of biological samples

scientific article

Bacterial immobilization for imaging by atomic force microscopy

scientific article published on 10 August 2011

Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis

scientific article published on 15 January 2011

Biomineralization at the nanoscale learning from diatoms

scientific article published in January 2008

Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy

scientific article published on 24 November 2010

Characterization of indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343.

scientific article published on 21 February 2018

Comparison of the indentation and elasticity of E. coli and its spheroplasts by AFM.

scientific article published on 7 May 2007

Computationally Guided Discovery and Experimental Validation of Indole-3-acetic Acid Synthesis Pathways

scientific article published on 18 November 2019

Continuous protein production in nanoporous, picolitre volume containers

scientific article published on 31 August 2011

Cytotoxicity Induced by Engineered Silver Nanocrystallites Is Dependent on Surface Coatings and Cell Types ⬇️

scientific article published on January 23, 2012

Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip

scientific article

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

scientific article

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

scientific article

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

scientific article

Effects of colistin on surface ultrastructure and nanomechanics of Pseudomonas aeruginosa cells

scientific article

Effects of engineered cerium oxide nanoparticles on bacterial growth and viability

scientific article

Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin ⬇️

scientific article published on May 13, 2011

Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole.

scientific article published on 29 June 2009

Elucidating the potential of crude cell extracts for producing pyruvate from glucose

scientific article published on 14 May 2018

Enzyme reactions in nanoporous, picoliter volume containers.

scientific article published on 27 December 2011

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

scientific article

Exploration of the Biosynthetic Potential of the Microbiome

scientific article published on 01 September 2018

Expression optimization and synthetic gene networks in cell-free systems.

scientific article published on 17 December 2011

Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions

scientific article

Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes

scientific article published on January 2002

Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

scientific article

Increasing access to microfluidics for studying fungi and other branched biological structures.

scientific article published on 10 June 2019

Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces

scientific article published on 16 July 2019

Layer-by-layer templated assembly of silica at the nanoscale

scientific article published on 07 February 2013

Measuring cell surface elasticity on enteroaggregative Escherichia coli wild type and dispersin mutant by AFM.

scientific article published on 21 April 2006

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

scientific article

Microstencils to generate defined, multi-species patterns of bacteria

scientific article

Microstructured block copolymer surfaces for control of microbe adhesion and aggregation

scientific article

Modular microfluidics for point-of-care protein purifications

scientific article published in April 2015

Molecular transport in a crowded volume created from vertically aligned carbon nanofibres: a fluorescence recovery after photobleaching study

scientific article published on 30 October 2006

Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator

scientific article

Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis

scientific article published on 14 July 2011

Mounting of Escherichia coli spheroplasts for AFM imaging.

scientific article

Multi-input regulation and logic with T7 promoters in cells and cell-free systems

scientific article

Nano-enabled synthetic biology.

scientific article

New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies

scientific article (publication date: 21 April 2015)

Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses

scientific article published on 01 September 2004

Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor

scientific article published on 01 June 2014

Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays.

scientific article published on January 2008

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

scientific article published in June 2012

Relating nanomaterial properties and microbial toxicity.

scientific article published on 03 December 2012

Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria

scientific article published on July 2010

Size-selectivity and anomalous subdiffusion of nanoparticles through carbon nanofiber-based membranes ⬇️

scientific article published on October 15, 2008

Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development

scientific article (publication date: 2016)

Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand

scientific article published on 01 December 1993

Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts.

scientific article

Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude E. coli Cell-Free Systems

scientific article published on 12 October 2020

The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense

scientific article published on 16 August 2011

The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region

scientific article published on 01 March 2007

Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis

scientific article published on 26 September 2013

Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care

scientific article published on 22 December 2015

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

scientific article

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System

scientific article published on 26 April 2016

Volume labeling with Alexa Fluor dyes and surface functionalization of highly sensitive fluorescent silica (SiO2) nanoparticles.

scientific article

List of works by Mitchel J Doktycz

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

A comparison of hybridization efficiency between flat glass and channel glass solid supports

A general system for studying protein-protein interactions in Gram-negative bacteria

AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces.

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

Actuatable Membranes Based on Polypyrrole-Coated Vertically Aligned Carbon Nanofibers

An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.

An optimized nanoparticle separator enabled by electron beam induced deposition

Application of AFM in understanding biomineral formation in diatoms.

Atomic force microscopy of biological samples

Bacterial immobilization for imaging by atomic force microscopy

Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis

Biomineralization at the nanoscale learning from diatoms

Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy

Characterization of indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343.

Comparison of the indentation and elasticity of E. coli and its spheroplasts by AFM.

Computationally Guided Discovery and Experimental Validation of Indole-3-acetic Acid Synthesis Pathways

Continuous protein production in nanoporous, picolitre volume containers

Cytotoxicity Induced by Engineered Silver Nanocrystallites Is Dependent on Surface Coatings and Cell Types ⬇️

Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Effects of colistin on surface ultrastructure and nanomechanics of Pseudomonas aeruginosa cells

Effects of engineered cerium oxide nanoparticles on bacterial growth and viability

Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin ⬇️

Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole.

Elucidating the potential of crude cell extracts for producing pyruvate from glucose

Enzyme reactions in nanoporous, picoliter volume containers.

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

Exploration of the Biosynthetic Potential of the Microbiome

Expression optimization and synthetic gene networks in cell-free systems.

Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions

Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes

Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

Increasing access to microfluidics for studying fungi and other branched biological structures.

Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces

Layer-by-layer templated assembly of silica at the nanoscale

Measuring cell surface elasticity on enteroaggregative Escherichia coli wild type and dispersin mutant by AFM.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment

Microstencils to generate defined, multi-species patterns of bacteria

Microstructured block copolymer surfaces for control of microbe adhesion and aggregation

Modular microfluidics for point-of-care protein purifications

Molecular transport in a crowded volume created from vertically aligned carbon nanofibres: a fluorescence recovery after photobleaching study

Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator

Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis

Mounting of Escherichia coli spheroplasts for AFM imaging.

Multi-input regulation and logic with T7 promoters in cells and cell-free systems

Nano-enabled synthetic biology.

New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies

Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses

Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor

Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays.

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

Relating nanomaterial properties and microbial toxicity.

Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria

Size-selectivity and anomalous subdiffusion of nanoparticles through carbon nanofiber-based membranes ⬇️

Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development

Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand

Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts.

Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude E. coli Cell-Free Systems

The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense

The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region

Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis

Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System

Volume labeling with Alexa Fluor dyes and surface functionalization of highly sensitive fluorescent silica (SiO2) nanoparticles.