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List of works by Antonia Vlahou

'Brukin2D': a 2D visualization and comparison tool for LC-MS data

scientific article published on 16 June 2009

2nd Combined Working Group and Management Committee Meeting of Urine and Kidney Proteomics COST Action 29–30 March 2009, Nafplio, Greece ⬇️

scientific article (publication date: September 2009)

A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury (AKI): involvement of NMDA receptor GRIN1 in murine AKI.

scientific article

A comparison between MALDI-MS and CE-MS data for biomarker assessment in chronic kidney diseases.

scientific article

A systematic re-examination of processing of MHCI-bound antigenic peptide precursors by ER aminopeptidase 1

scientific article published on 17 March 2020

A tumor-protective role for human kallikrein-related peptidase 6 in breast cancer mediated by inhibition of epithelial-to-mesenchymal transition

scientific article published on 21 April 2009

A urinary proteome-based classifier for the early detection of decline in glomerular filtration

scientific article published on 6 July 2016

AF-MSCs fate can be regulated by culture conditions

scientific article published on 4 April 2013

APEX2-Mediated Proximity Labeling Resolves the DDIT4-Interacting Proteome

scientific article published on 06 May 2022

Addressing the challenge of defining valid proteomic biomarkers and classifiers

scientific article

Advances in urinary proteome analysis and applications in systems biology

scientific article

Analysis of secreted proteins for the study of bladder cancer cell aggressiveness

scientific article

Analysis of the urine proteome via a combination of multi-dimensional approaches

scientific article

Analysis of urinary cathepsin C for diagnosing Papillon-Lefèvre syndrome

scientific article published in 2016

Analytical Performance of ELISA Assays in Urine: One More Bottleneck towards Biomarker Validation and Clinical Implementation

scientific article published on 18 February 2016

Application of Preparative Electrophoresis for Clinical Proteomics in Urine: Is it Feasible?

scientific article published in 2009

Applications of multiple reaction monitoring targeted proteomics assays in human plasma

scientific article published on 17 May 2019

Back to the future in bladder cancer research ⬇️

scientific article published on June 1, 2011

BcCluster: A Bladder Cancer Database at the Molecular Level

scientific article published on 7 January 2016

Biological sample collection for clinical proteomics: existing SOPs

scientific article

Biomarkers for bladder cancer aggressiveness

scientific article published on September 2012

CE-MS-based proteomics in biomarker discovery and clinical application

scientific article

Capillary zone electrophoresis on-line coupled to mass spectrometry: A perspective application for clinical proteomics

scientific article

Cervical Cancer Cell Line Secretome Highlights the Roles of Transforming Growth Factor-Beta-Induced Protein ig-h3, Peroxiredoxin-2, and NRF2 on Cervical Carcinogenesis

scientific article

Challenges of using mass spectrometry as a bladder cancer biomarker discovery platform

scientific article published on 04 January 2008

Characterization and comparative performance of lentiviral vector preparations concentrated by either one-step ultrafiltration or ultracentrifugation.

scientific article

Characterization of the human urine proteome by preparative electrophoresis in combination with 2-DE

scholarly article by Panagiotis G. Zerefos published in August 2006

Chromosomal and proteome analysis of a new T24-based cell line model for aggressive bladder cancer

scientific article published on January 2009

Clinical applications of capillary electrophoresis coupled to mass spectrometry in biomarker discovery: Focus on bladder cancer ⬇️

scientific article published on December 1, 2013

Clinical proteomics in obstetrics and neonatology

scientific article published on 03 January 2014

Clinical proteomics: current techniques and potential applications in the elderly

scientific article

Comparative Analysis of Label-Free and 8-Plex iTRAQ Approach for Quantitative Tissue Proteomic Analysis

scientific article

Comparison of Depletion Strategies for the Enrichment of Low-Abundance Proteins in Urine

scientific article published on 24 July 2015

Comparison of Urine and Plasma Peptidome Indicates Selectivity in Renal Peptide Handling

article by Pedro Magalhães et al published 23 April 2018 in Proteomics - Clinical Applications

Comparison of higher energy collisional dissociation and collision-induced dissociation MS/MS sequencing methods for identification of naturally occurring peptides in human urine

scientific article published on June 2015

Comprehensive human urine standards for comparability and standardization in clinical proteome analysis

scientific article

Computational Methods and Algorithms for Mass-Spectrometry Based Differential Proteomics

scholarly article by Seferina Mavroudi et al published 1 December 2007 in Current Proteomics: the journal for current and in-depth reviews on proteomics

Considerations on the use of urine markers in the management of patients with high-grade non-muscle-invasive bladder cancer.

scientific article

Considerations on the use of urine markers in the management of patients with low-/intermediate-risk non-muscle invasive bladder cancer

scientific article published on 09 January 2014

Deciphering the disease-related molecular networks using urine proteomics

scholarly article by Paulo André Dias Bastos et al published September 2017 in Trends in Analytical Chemistry

Desmin and αB-crystallin interplay in the maintenance of mitochondrial homeostasis and cardiomyocyte survival.

scientific article published on 26 August 2016

Developing proteomic biomarkers for bladder cancer: towards clinical application

scientific article published on 26 May 2015

Development and Validation of Urine-based Peptide Biomarker Panels for Detecting Bladder Cancer in a Multi-center Study.

scientific article published on 29 March 2016

Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine

scientific article

Diagnosis and Prediction of CKD Progression by Assessment of Urinary Peptides

scientific article published on 14 January 2015

Diagnosis of Ovarian Cancer Using Decision Tree Classification of Mass Spectral Data

scientific article

Diagnostic and Prognostic Performance of Secreted Protein Acidic and Rich in Cysteine (SPARC) Assay for Detecting Primary and Recurrent Urinary Bladder Cancer

scientific article published on 30 January 2019

Discovery and validation of urinary biomarkers for detection of renal cell carcinoma

scientific article published on 25 December 2013

Drug resistance in natural isolates of Leishmania donovani s.l. promastigotes is dependent of Pgp170 expression

scientific article (publication date: 2013)

Effect of Heme Oxygenase-1 Deficiency on Glomerular Proteomics

scientific article published on 2 June 2016

Epidemiologic design and analysis for proteomic studies: a primer on -omic technologies

scientific article published on 19 March 2015

Establishment of a European Network for Urine and Kidney Proteomics

Evaluation of Peripheral Blood and Cord Blood Platelet Lysates in Isolation and Expansion of Multipotent Mesenchymal Stromal Cells

scientific article published on 26 February 2018

Evaluation of decellularization in umbilical cord artery.

scientific article published on November 2014

Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles

scientific article

Fetal mesenchymal stem cells in cancer therapy

scientific article published on March 2013

Fibulin-3 Attenuates Phosphate-Induced Vascular Smooth Muscle Cell Calcification by Inhibition of Oxidative Stress

scientific article published on 18 April 2018

GeLC-MS: A Sample Preparation Method for Proteomics Analysis of Minimal Amount of Tissue

scientific article published on 10 October 2017

Gene Expression Monotonicity across Bladder Cancer Stages Informs on the Molecular Pathogenesis and Identifies a Prognostic Eight-Gene Signature

scientific article published on 21 May 2022

High-Throughput LC-MS/MS Proteomic Analysis of a Mouse Model of Mesiotemporal Lobe Epilepsy Predicts Microglial Activation Underlying Disease Development

scientific article

Human amniotic fluid-derived mesenchymal stem cells as therapeutic vehicles: a novel approach for the treatment of bladder cancer.

scientific article published on 11 October 2011

IMAC fractionation in combination with LC-MS reveals H2B and NIF-1 peptides as potential bladder cancer biomarkers

scientific article published on 21 August 2013

Identification of ageing-associated naturally occurring peptides in human urine

scientific article published on 29 September 2015

Identification of novel molecular signatures of IgA nephropathy through an integrative -omics analysis

scientific article published on 22 August 2017

Impairment of chaperone-mediated autophagy affects neuronal homeostasis through altered expression of DJ-1 and CRMP-2 proteins

scientific article published on 15 December 2018

Implementation of Clinical Proteomics: A Step Closer to Personalized Medicine?

scientific article published on 19 December 2018

Implementation of proteomic biomarkers: making it work

scientific article

Implications of the mitochondrial interactome of mammalian thioredoxin 2 for normal cellular function and disease

scientific article published on 21 April 2019

Improving peptide relative quantification in MALDI-TOF MS for biomarker assessment

scientific article

In vitro and in vivo properties of distinct populations of amniotic fluid mesenchymal progenitor cells.

scientific article published on September 2011

Integrative analysis of extracellular and intracellular bladder cancer cell line proteome with transcriptome: improving coverage and validity of -omics findings

scientific article published on 11 May 2016

Marked defects in the expression and glycosylation of alpha2-HS glycoprotein/fetuin-A in plasma from neonates with intrauterine growth restriction: proteomics screening and potential clinical implications

scientific article

Microhematuria assessment an IBCN consensus-Based upon a critical review of current guidelines

scientific article published on 15 September 2016

Molecular and proteomic characterization of human mesenchymal stem cells derived from amniotic fluid: comparison to bone marrow mesenchymal stem cells

scientific article

Multiplexed MRM-based protein quantification of putative prognostic biomarkers for chronic kidney disease progression in plasma

scientific article published on 16 March 2020

NADPH oxidases as drug targets and biomarkers in neurodegenerative diseases: What is the evidence?

scientific article published on 12 August 2017

Network views for personalized medicine

scientific article published on 10 May 2013

New insights in molecular mechanisms involved in chronic kidney disease using high-resolution plasma proteome analysis

scientific article

New selective peptidyl di(chlorophenyl) phosphonate esters for visualizing and blocking neutrophil proteinase 3 in human diseases

scientific article

Noninvasive diagnosis of chronic kidney diseases using urinary proteome analysis

scientific article published on 5 October 2016

Overexpression of alpha-defensin is associated with bladder cancer invasiveness

scientific article

PeptiCKDdb-peptide- and protein-centric database for the investigation of genesis and progression of chronic kidney disease

scientific article

Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma

scientific article

Plasma proteomic analysis reveals altered protein abundances in cardiovascular disease

scientific article published on 17 April 2018

Prediction of Muscle-invasive Bladder Cancer Using Urinary Proteomics

Profilin 1 is a potential biomarker for bladder cancer aggressiveness

scientific article published on 8 December 2011

Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation

scientific article

Protein interactome of muscle invasive bladder cancer

scientific article

Protein profiling in urine for the diagnosis of bladder cancer

scientific article

Protein spot detection in 2D-GE images using morphological operators

article published in 2010

Proteome of olive non-glandular trichomes reveals protective protein network against (a)biotic challenge

scientific article published on 27 September 2018

Proteome-based classification of Nonmuscle Invasive Bladder Cancer

scientific article published on 26 July 2019

Proteome-based systems biology analysis of the diabetic mouse aorta reveals major changes in fatty acid biosynthesis as potential hallmark in diabetes mellitus-associated vascular disease

scientific article published on 26 February 2014

Proteomic Feature Maps: A new visualization approach in proteomics analysis

article

Proteomics Analysis of Formalin Fixed Paraffin Embedded Tissues in the Investigation of Prostate Cancer

scientific article published on 18 November 2019

Proteomics analysis of bladder cancer invasion: Targeting EIF3D for therapeutic intervention

scientific article published on 20 April 2017

Proteomics approaches in cervical cancer: focus on the discovery of biomarkers for diagnosis and drug treatment monitoring

scientific article

Proteomics based identification of KDM5 histone demethylases associated with cardiovascular disease

scientific article published on 28 February 2019

Proteomics in cardiovascular disease: recent progress and clinical implication and implementation.

scientific article published on 20 December 2016

Putting value in biomarker research and reporting

scientific article

Quantitative proteomic landscape of unstable atherosclerosis identifies molecular signatures and therapeutic targets for plaque stabilization

scientific article published in 2023

Recommendations for biomarker identification and qualification in clinical proteomics

scientific article published in August 2010

Redox proteomics: from residue modifications to putative biomarker identification by gel- and LC-MS-based approaches

scientific article published on December 2013

Renal and Urinary Proteomics

scientific article published on 01 June 2011

Report on the 1st International Conference of the Hellenic Proteomics Society in Athens, Greece

scientific article published in September 2005

Report on the Workshop and Regular Meeting of the Imode-CKD and Bcmolmed Marie Curie Training and Research Programs

scientific article published in December 2015

Report on the first combined working group and management committee meeting of EuroKUP (Urine and Kidney Proteomics cost action)

Role of Cytosolic Serine Hydroxymethyl Transferase 1 (SHMT1) in Phosphate-Induced Vascular Smooth Muscle Cell Calcification

scientific article published on 02 August 2018

SRM/MRM targeted proteomics as a tool for biomarker validation and absolute quantification in human urine

scientific article published on 15 October 2015

Sample preparation and bioinformatics in MALDI profiling of urinary proteins

scientific article published on 19 April 2007

Search for potential markers for prostate cancer diagnosis, prognosis and treatment in clinical tissue specimens using amine-specific isobaric tagging (iTRAQ) with two-dimensional liquid chromatography and tandem mass spectrometry

scientific article

Secretome proteomics for discovery of cancer biomarkers

scientific article

Silencing of Profilin-1 suppresses cell adhesion and tumor growth via predicted alterations in integrin and Ca2+ signaling in T24M-based bladder cancer models

scientific article published on 23 September 2016

Stem cells: insights into the secretome

scientific article published on 31 January 2013

Subcellular trafficking of the nuclear receptor COUP-TF in the early embryonic cell cycle

scientific article (publication date: 15 February 2000)

Subtle proteome differences identified between post-dormant vegetative and floral peach buds

scientific article published on 23 February 2011

Systems biology identifies cytosolic PLA2 as a target in vascular calcification treatment.

scientific article published on 16 May 2019

Systems biology to battle vascular disease

scientific article published on 03 February 2010

Systems biology: opening new avenues in clinical research

scientific article published on 05 February 2010

Taking the next step—Advancing bladder cancer management

article by Antonia Vlahou et al published October 2016 in Urologic Oncology

Targeting the proteome of cellular fractions: focus on secreted proteins

scientific article

Technical aspects and inter-laboratory variability in native peptide profiling: the CE-MS experience

scientific article published on 04 October 2012

The family of 14-3-3 proteins and specifically 14-3-3σ are up-regulated during the development of renal pathologies

scientific article published on 28 June 2018

The use of urinary proteomics in the assessment of suitability of mouse models for ageing

scientific article

TiO2-ZrO2 affinity chromatography polymeric microchip for phosphopeptide enrichment and separation

scientific article

Tissue proteomics studies in the investigation of prostate cancer

scientific article published on 16 July 2018

Urinary Glycopeptide Analysis for the Investigation of Novel Biomarkers

scientific article published on 18 October 2018

Urinary Proteomics in Predicting Heart Transplantation Outcomes (uPROPHET)-Rationale and database description.

scientific article published on 7 September 2017

Urinary peptidomics analysis reveals proteases involved in diabetic nephropathy.

scientific article published on 9 November 2017

Urinary proteomics and molecular determinants of chronic kidney disease: possible link to proteases

scientific article

Urine proteomics in kidney and urogenital diseases: Moving towards clinical applications

scientific article published on 18 May 2011

Very early and transient vegetal-plate expression of SpKrox1, a Krüppel/Krox gene from Stronglyocentrotus purpuratus.

scientific article published on December 1996

Zinc α2-glycoprotein as a potential novel urine biomarker for the early diagnosis of prostate cancer

scientific article published on 28 September 2012

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