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List of works by Christian H. Ahrens

A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli

scientific article

A high-quality catalog of the Drosophila melanogaster proteome

scientific article

A link between arabinose utilization and oxalotrophy in Bradyrhizobium japonicum.

scientific article published on 24 January 2014

A mighty small heart: the cardiac proteome of adult Drosophila melanogaster

scientific article

An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in

scientific article published on 07 May 2019

An integrated model system to gain mechanistic insights into biofilm-associated antimicrobial resistance in Pseudomonas aeruginosa MPAO1

scientific article published on 30 October 2020

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

scientific article

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics.

scientific article published on 15 November 2017

Biofilm Formation Potential of Heat-Resistant Escherichia coli Dairy Isolates and the Complete Genome of Multidrug-Resistant, Heat-Resistant Strain FAM21845

scientific article published on 26 May 2017

Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover ⬇️

scientific article published on September 4, 2012

Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level.

scientific article published on 30 January 2018

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

scientific article

Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi

scientific article (publication date: 5 January 2017)

Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.

scientific article published on 26 September 2016

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

scientific article

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

scientific article published on 22 July 2013

Experimental Peptide Identification Repository (EPIR): an integrated peptide-centric platform for validation and mining of tandem mass spectrometry data

scientific article

Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

scientific article

Generating and navigating proteome maps using mass spectrometry.

scientific article published on 14 October 2010

Genome-Wide Transcript Analysis of Bradyrhizobium japonicum Bacteroids in Soybean Root Nodules

article

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation

scientific article

Identification and characterization of a putative origin of DNA replication in the genome of a baculovirus pathogenic for Orgyia pseudotsugata

scientific article published in December 1993

Identification and characterization of a second putative origin of DNA replication in a baculovirus of Orgyia pseudotsugata.

scientific article published on March 1995

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster

scientific article

Identification of essential trans-acting regions required for DNA replication of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus: lef-1 is an essential replication gene.

scientific article published on March 1995

Identification of genes involved in DNA replication of the Autographa californica baculovirus.

scientific article published in November 1994

Identification, sequence, and transcriptional analysis of lef-3, a gene essential for Orgyia pseudotsugata baculovirus DNA replication.

scientific article published on July 1995

Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data

scientific article

Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane

scientific article published on 21 September 2021

Linking Comparative Genomics of Nine Potato-Associated Pseudomonas Isolates With Their Differing Biocontrol Potential Against Late Blight

scientific article published on 30 April 2020

Long-Chain Alkyl Cyanides: Unprecedented Volatile Compounds Released by Pseudomonas and Micromonospora Bacteria.

scientific article published on 9 March 2017

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system

scientific article published on 25 June 2019

Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures

scientific article published on 27 May 2016

Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. ⬇️

scientific article

Model organism proteomics

scientific article published on 9 September 2010

PeptideClassifier for protein inference and targeted quantitative proteomics

scientific article published on 01 July 2010

Protein and gene model inference based on statistical modeling in k-partite graphs.

scientific article

Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism

scientific article published on 28 January 2014

Proteomics analysis of Psychotria leaf nodule symbiosis: improved genome annotation and metabolic predictions.

scientific article published in November 2013

Protter: interactive protein feature visualization and integration with experimental proteomic data

scientific article published on 24 October 2013

Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens with Phytotoxic Effect in the Apple Flower.

scientific article published on 9 February 2018

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats

scientific article published on 01 September 2018

Quantitative proteomics: a central technology for systems biology

scientific article published on 21 December 2009

Response of Burkholderia cenocepacia H111 to micro-oxia.

scientific article

Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer

article

Short communication: Heat-resistant Escherichia coli as potential persistent reservoir of extended-spectrum β-lactamases and Shiga toxin-encoding phages in dairy

scientific article published on 24 August 2016

Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima

scientific article published on 20 May 2019

The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111.

scientific article

The DNA polymerase and helicase genes of a baculovirus of Orgyia pseudosugata.

scientific article published on May 1996

The HUPO initiative on Model Organism Proteomes, iMOP.

scientific article published in February 2012

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry

scientific article published on 25 April 2007

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The hemolymph proteome of fed and starved Drosophila larvae

scientific article (publication date: 2013)

The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome.

scientific article published on March 1997

Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach

scientific article published on 01 June 2021

Unraveling the small proteome of the plant symbiont by ribosome profiling and proteogenomics

scientific article published in 2023

Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents

scientific article published on 23 November 2015

WNT1 inducible signaling pathway protein 3, WISP-3, a novel target gene in colorectal carcinomas with microsatellite instability

scientific article published on 01 December 2001

σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111

scientific article published on 3 April 2015

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