Search filters

List of works by Holger Daims

A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms

scientific article published on 19 June 2019

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

scientific article published on 6 June 2016

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

scientific article

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

scientific article published on 25 September 2019

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

scholarly article

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

scientific article

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

scientific article

An automated Raman-based platform for the sorting of live cells by functional properties

scientific article published on 18 March 2019

Characterization of the First " Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

scientific article published on 10 July 2018

Co-localized or randomly distributed? Pair cross correlation of in vivo grown subgingival biofilm bacteria quantified by digital image analysis

scientific article

Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase

scholarly article

Colonization of freshwater biofilms by nitrifying bacteria from activated sludge

scientific article published on 2 April 2013

Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation

scientific article published on 14 November 2014

Complete nitrification by Nitrospira bacteria

scientific article

Crenothrix are major methane consumers in stratified lakes

scientific article published on 6 June 2017

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

scientific article published on 14 February 2018

Cyanate as an energy source for nitrifiers

scientific article

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

scientific article

Depletion of unwanted nucleic acid templates by selective cleavage: LNAzymes, catalytically active oligonucleotides containing locked nucleic acids, open a new window for detecting rare microbial community members

scientific article

Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp. PCC7425

scientific article

Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility

scientific article

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

scientific article

Drivers of bacterial colonization patterns in stream biofilms

scientific article

Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants

article

Enrichment and genome sequence of the group I.1a ammonia-oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" representing a clade globally distributed in thermal habitats

scientific article

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

scientific article published on 5 May 2008

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

scientific article

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

scientific article published on 24 July 2020

Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes

scientific article

Functionally relevant diversity of closely related Nitrospira in activated sludge.

scientific article

Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting

scientific article published on 16 October 2020

Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ⬇️

scientific article published on 19 April 2016

Giant viruses with an expanded complement of translation system components

scientific article (publication date: 6 April 2017)

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation

scientific article published in August 2014

Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases

scientific article published on 6 June 2012

Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages.

scientific article

In situ techniques and digital image analysis methods for quantifying spatial localization patterns of nitrifiers and other microorganisms in biofilm and flocs

scientific article

Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring.

scientific article published on 8 December 2010

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.

scientific article

Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches

article published in 2010

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

scientific article

Low yield and abiotic origin of NO formed by the complete nitrifier Nitrospira inopinata

scientific article published on 23 April 2019

Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity

scientific article

Microbial community composition and function in wastewater treatment plants

scientific article

Microbial landscapes: new paths to biofilm research.

scientific article published in January 2007

NH4+ ad-/desorption in sequencing batch reactors: simulation, laboratory and full-scale studies

scientific article published in January 2008

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

scientific article

Nitrification in terrestrial hot springs of Iceland and Kamchatka.

scientific article

Nitrite concentration influences the population structure of Nitrospira-like bacteria

scientific article

Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant

article

Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi

scientific article

Nitrospira

scientific article published on 28 February 2018

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants

scientific article published on 2 September 2014

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

scientific article

Physiological and phylogenetic characterization of a novel lithoautotrophic nitrite-oxidizing bacterium, 'Candidatus Nitrospira bockiana'.

scientific article

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

scientific article

Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis

scientific article published on March 2007

Redox thermodynamics of high-spin and low-spin forms of chlorite dismutases with diverse subunit and oligomeric structures

scientific article

Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

scientific article published on 8 January 2016

Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge

scientific article published in March 2006

Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization

scientific article

Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": identification of a catalytically important amino acid residue

scientific article

Structure and Community Composition of Sprout-Like Bacterial Aggregates in a Dinaric Karst Subterranean Stream ⬇️

scientific article published on January 13, 2013

Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes

scientific article published on 17 January 2015

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

scientific article

The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer

scientific article

The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

scientific article published on 22 November 2018

Thermophilic biological nitrogen removal in industrial wastewater treatment.

scientific article published on 9 May 2013

Three-dimensional stratification of bacterial biofilm populations in a moving bed biofilm reactor for nitritation-anammox

scientific article published on 29 January 2014

Unexpected Diversity of Chlorite Dismutases: a Catalytically Efficient Dimeric Enzyme from Nitrobacter winogradskyi

scientific article

Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community

scientific article

Wastewater treatment: a model system for microbial ecology

scientific article published on 12 September 2006

daime, a novel image analysis program for microbial ecology and biofilm research

scientific article

Paulina is supported by:

About Paulina

Help