List of works - Sara Hallin

Abundance and composition of epiphytic bacterial and archaeal ammonia oxidizers of marine red and brown macroalgae

scientific article

Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France)

article

Activity and composition of ammonia oxidizing bacterial communities and emission dynamics of NH3 and N2O in a compost reactor treating organic household waste

scientific article published on 4 February 2009

Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization

scientific article

Adaptation of denitrifying bacteria to acetate and methanol in activated sludge

article by Sara Hallin et al published June 1996 in Water Research

Agricultural diversification promotes multiple ecosystem services without compromising yield

scientific article published on 04 November 2020

Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues

article

Archaeal Ammonia Oxidizers Dominate in Numbers, but Bacteria Drive Gross Nitrification in N-amended Grassland Soil

scientific article published on 30 November 2015

Assembly of root-associated N2O-reducing communities of annual crops is governed by selection for <i>nosZ</i> clade I over clade II

scientific article published in 2022

Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe

scientific article published on 6 January 2024

Community survey of ammonia-oxidizing bacteria in full-scale activated sludge processes with different solids retention time.

scientific article

Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil

scientific article

Contrasting plant–soil–microbial feedbacks stabilize vegetation types and uncouple topsoil C and N stocks across a subarctic–alpine landscape

scientific article published in 2022

Control of Microthrix parvicella and sludge bulking by ozone in a full-scale WWTP.

scientific article

Denitrification rates in lake sediments of mountains affected by high atmospheric nitrogen deposition

scientific article published on 20 February 2020

Design and evaluation of primers targeting genes encoding NO-forming nitrite reductases: implications for ecological inference of denitrifying communities.

scientific article published on 14 December 2016

Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management

article

Distribution and Environmental Drivers of Fungal Denitrifiers in Global Soils

scientific article published in 2023

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

scientific article published on 21 January 2010

Ecology of Denitrifying Prokaryotes in Agricultural Soil

Effects of copper contamination on N cycling microbial guilds and plant performance in two contrasting grassland soils

scientific article published in 2023

Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea

scientific article

Exploiting ecosystem services in agriculture for increased food security

scholarly article by Riccardo Bommarco et al published June 2018 in Global food security

Expression of nirK and nirS genes in two strains of Pseudomonas stutzeri harbouring both types of NO-forming nitrite reductases

article

External carbon addition for enhancing denitrification modifies bacterial community composition and affects CH4 and N2O production in sub-arctic mining pond sediments

scientific article published on 10 April 2019

Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community.

scientific article

Genetic potential for N2O emissions from the sediment of a free water surface constructed wetland

scientific article

Genomics and Ecology of Novel N2O-Reducing Microorganisms

scientific article

Geospatial variation in co-occurrence networks of nitrifying microbial guilds

article

Global phylogeography of chitinase genes in aquatic metagenomes

scientific article published on 29 November 2010

Growth yield and selection of nosZ clade II-types in a continuous enrichment culture of N2 O respiring bacteria

scientific article published on 19 February 2018

Habitat diversity and ecosystem multifunctionality-The importance of direct and indirect effects

scientific article

Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient

scientific article published on 25 November 2016

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability

scientific article

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability

article

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

article

Importance of plant species for nitrogen removal using constructed floating wetlands in a cold climate

scientific article published in 2019

Influence of genetically modified organisms on agro-ecosystem processes

Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples".

scientific article published on 21 January 2011

Intercropping affects genetic potential for inorganic nitrogen cycling by root-associated microorganisms in Medicago sativa and Dactylis glomerata

scholarly article by Ming Zhao et al published October 2017 in Applied Soil Ecology

Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions

scientific article

Knowledge gaps in soil carbon and nitrogen interactions – From molecular to global scale

Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture

scientific article published on 7 February 2018

Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil

article

Metabolic profiles and genetic diversity of denitrifying communities in activated sludge after addition of methanol or ethanol

scientific article

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

scientific article published on 24 February 2016

Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties

scientific article published on July 2015

Mixtures of macrophyte growth forms promote nitrogen cycling in wetlands

Nitrogen fixation in shallow-water sediments: Spatial distribution and controlling factors

article by Björn Andersson et al published 12 October 2014 in Limnology and Oceanography

Nitrogen removal and spatial distribution of denitrifier and anammox communities in a bioreactor for mine drainage treatment

scientific article published on 4 September 2014

Non-denitrifying nitrous oxide-reducing bacteria - An effective N 2 O sink in soil

scholarly article by L.A. Domeignoz-Horta et al published December 2016 in Soil Biology and Biochemistry

Phenotypic and genotypic heterogeneity among closely related soil-borne N2 - and N2 O-producing Bacillus isolates harboring the nosZ gene

scientific article published on 14 March 2011

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

scientific article published on 8 July 2008

Plant-microbe interactions in response to grassland herbivory and nitrogen eutrophication

scientific article published in 2021

Potential denitrification rates are spatially linked to colonization patterns of nosZ genotypes in an alluvial wetland

scientific article published in 2015

Reactive nitrogen restructures and weakens microbial controls of soil N<sub>2</sub>O emissions

scientific article published on 28 March 2022

Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE.

scientific article

Recently identified microbial guild mediates soil N2O sink capacity

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

article by Sara Hallin et al published 15 January 2009 in The ISME Journal

Relative abundance of denitrifying and DNRA bacteria and their activity determine nitrogen retention or loss in agricultural soil

scholarly article by Martina Putz et al published August 2018 in Soil Biology and Biochemistry

Relative importance of plant uptake and plant associated denitrification for removal of nitrogen from mine drainage in sub-arctic wetlands

scientific article published on 3 September 2015

Response of induced perturbation on replicating β-proteobacterial ammonia-oxidizing populations in soil.

scientific article published on 4 November 2011

Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management

article

Shaping of soil microbial communities by plants does not translate into specific legacy effects on organic carbon mineralization

scientific article published in 2021

Silver (Ag+) reduces denitrification and induces enrichment of novel nirK genotypes in soil

scientific article published on 24 January 2007

Soil bacterial networks are less stable under drought than fungal networks

scientific article published in Nature Communications

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

article

Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild

scientific article

Soil microbial diversity: an ISO standard for soil DNA extraction

article by Laurent Philippot et al published 6 July 2010 in Journal of Soils and Sediments

Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management.

scientific article

Soil type overrides plant effect on genetic and enzymatic N 2 O production potential in arable soils

article

Spatial and phyloecological analyses of nosZ genes underscore niche differentiation amongst terrestrial N 2 O reducing communities

article

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

scientific article published on 13 January 2011

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

scientific article published on 23 July 2009

Spatial variations in denitrification activity in wetland sediments explained by hydrology and denitrifying community structure.

scientific article published on 27 June 2007

Stable nitrogen-cycling capacity in relation to fertilization and intercropping in a sub-boreal grassland

scientific article published in 2022

Standardisation of methods in soil microbiology: progress and challenges

scientific article

Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland

scientific article

Survey of bromodeoxyuridine uptake among environmental bacteria and variation in uptake rates in a taxonomically diverse set of bacterial isolates.

scientific article published on 2 June 2011

Temporal changes in abundance and composition of ammonia-oxidizing bacterial and archaeal communities in a drained peat soil in relation to N2O emissions

article

The ecological coherence of high bacterial taxonomic ranks

scientific article published in July 2010

The role of plant type and salinity in the selection for the denitrifying community structure in the rhizosphere of wetland vegetation.

scientific article published in June 2012

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

scientific article published on 15 November 2012

Towards food, feed and energy crops mitigating climate change

scientific article

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

scientific article published on 28 July 2021

List of works by Sara Hallin

Abundance and composition of epiphytic bacterial and archaeal ammonia oxidizers of marine red and brown macroalgae

Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France)

Activity and composition of ammonia oxidizing bacterial communities and emission dynamics of NH3 and N2O in a compost reactor treating organic household waste

Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization

Adaptation of denitrifying bacteria to acetate and methanol in activated sludge

Agricultural diversification promotes multiple ecosystem services without compromising yield

Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues

Archaeal Ammonia Oxidizers Dominate in Numbers, but Bacteria Drive Gross Nitrification in N-amended Grassland Soil

Assembly of root-associated N2O-reducing communities of annual crops is governed by selection for <i>nosZ</i> clade I over clade II

Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe

Community survey of ammonia-oxidizing bacteria in full-scale activated sludge processes with different solids retention time.

Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil

Contrasting plant–soil–microbial feedbacks stabilize vegetation types and uncouple topsoil C and N stocks across a subarctic–alpine landscape

Control of Microthrix parvicella and sludge bulking by ozone in a full-scale WWTP.

Denitrification rates in lake sediments of mountains affected by high atmospheric nitrogen deposition

Design and evaluation of primers targeting genes encoding NO-forming nitrite reductases: implications for ecological inference of denitrifying communities.

Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management

Distribution and Environmental Drivers of Fungal Denitrifiers in Global Soils

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

Ecology of Denitrifying Prokaryotes in Agricultural Soil

Effects of copper contamination on N cycling microbial guilds and plant performance in two contrasting grassland soils

Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea

Exploiting ecosystem services in agriculture for increased food security

Expression of nirK and nirS genes in two strains of Pseudomonas stutzeri harbouring both types of NO-forming nitrite reductases

External carbon addition for enhancing denitrification modifies bacterial community composition and affects CH4 and N2O production in sub-arctic mining pond sediments

Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community.

Genetic potential for N2O emissions from the sediment of a free water surface constructed wetland

Genomics and Ecology of Novel N2O-Reducing Microorganisms

Geospatial variation in co-occurrence networks of nitrifying microbial guilds

Global phylogeography of chitinase genes in aquatic metagenomes

Growth yield and selection of nosZ clade II-types in a continuous enrichment culture of N2 O respiring bacteria

Habitat diversity and ecosystem multifunctionality-The importance of direct and indirect effects

Habitat generalists and specialists in microbial communities across a terrestrial-freshwater gradient

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability

Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

Importance of plant species for nitrogen removal using constructed floating wetlands in a cold climate

Influence of genetically modified organisms on agro-ecosystem processes

Inter-laboratory evaluation of the ISO standard 11063 "Soil quality - Method to directly extract DNA from soil samples".

Intercropping affects genetic potential for inorganic nitrogen cycling by root-associated microorganisms in Medicago sativa and Dactylis glomerata

Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions

Knowledge gaps in soil carbon and nitrogen interactions – From molecular to global scale

Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture

Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil

Metabolic profiles and genetic diversity of denitrifying communities in activated sludge after addition of methanol or ethanol

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties

Mixtures of macrophyte growth forms promote nitrogen cycling in wetlands

Nitrogen fixation in shallow-water sediments: Spatial distribution and controlling factors

Nitrogen removal and spatial distribution of denitrifier and anammox communities in a bioreactor for mine drainage treatment

Non-denitrifying nitrous oxide-reducing bacteria - An effective N 2 O sink in soil

Phenotypic and genotypic heterogeneity among closely related soil-borne N2 - and N2 O-producing Bacillus isolates harboring the nosZ gene

Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

Plant-microbe interactions in response to grassland herbivory and nitrogen eutrophication

Potential denitrification rates are spatially linked to colonization patterns of nosZ genotypes in an alluvial wetland

Reactive nitrogen restructures and weakens microbial controls of soil N<sub>2</sub>O emissions

Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE.

Recently identified microbial guild mediates soil N2O sink capacity

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

Relative abundance of denitrifying and DNRA bacteria and their activity determine nitrogen retention or loss in agricultural soil

Relative importance of plant uptake and plant associated denitrification for removal of nitrogen from mine drainage in sub-arctic wetlands

Response of induced perturbation on replicating β-proteobacterial ammonia-oxidizing populations in soil.

Responses of bacterial and archaeal ammonia oxidizers to soil organic and fertilizer amendments under long-term management

Shaping of soil microbial communities by plants does not translate into specific legacy effects on organic carbon mineralization

Silver (Ag+) reduces denitrification and induces enrichment of novel nirK genotypes in soil

Soil bacterial networks are less stable under drought than fungal networks

Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla

Soil functional operating range linked to microbial biodiversity and community composition using denitrifiers as model guild

Soil microbial diversity: an ISO standard for soil DNA extraction

Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management.

Soil type overrides plant effect on genetic and enzymatic N 2 O production potential in arable soils

Spatial and phyloecological analyses of nosZ genes underscore niche differentiation amongst terrestrial N 2 O reducing communities

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

Spatial variations in denitrification activity in wetland sediments explained by hydrology and denitrifying community structure.

Stable nitrogen-cycling capacity in relation to fertilization and intercropping in a sub-boreal grassland

Standardisation of methods in soil microbiology: progress and challenges

Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland

Survey of bromodeoxyuridine uptake among environmental bacteria and variation in uptake rates in a taxonomically diverse set of bacterial isolates.