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List of works by John Rafferty

A New Mechanism for High-Affinity Uptake of C4-Dicarboxylates in Bacteria Revealed by the Structure of Rhodopseudomonas palustris MatC (RPA3494), a Periplasmic Binding Protein of the Tripartite Tricarboxylate Transporter (TTT) Family

scientific article published on 22 November 2018

A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes

scientific article published on 23 July 2002

Analysis of the catalytic and binding residues of the diadenosine tetraphosphate pyrophosphohydrolase from Caenorhabditis elegans by site-directed mutagenesis

scientific article published on 9 December 2002

Cloning, characterisation and crystallisation of a diadenosine 5',5"'-P(1),P(4)-tetraphosphate pyrophosphohydrolase from Caenorhabditis elegans

scientific article

Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction

scientific article

Crystal structure of E.coli RuvA with bound DNA Holliday junction at 6 Å resolution

scientific article published on June 1, 1998

Crystallization and initial X-ray analysis of the C2-subunit of crustacyanin.

scientific article published in March 1992

Crystallization and preliminary X-ray analysis of the receiver domain of a putative response regulator, BPSL0128, fromBurkholderia pseudomallei ⬇️

scientific article published on July 31, 2012

Crystallization and preliminary X-ray crystallographic studies on the parD-encoded protein Kid from Escherichia coli plasmid R1

scientific article published on 24 January 2002

Crystallization and quaternary structure analysis of an Lrp-like regulatory protein from the hyperthermophile Pyrococcus furiosus

scientific article published on 25 May 2001

Crystallization of E. coli RuvA gives insights into the symmetry of a Holliday junction/protein complex

scientific article published in January 1997

Crystallization of Escherichia coli RuvA complexed with a synthetic Holliday junction

scientific article published on 01 January 1999

Crystallization of Escherichia coli enoyl reductase and its complex with diazaborine.

scientific article published in November 1996

Crystallization of RusA Holliday junction resolvase from Escherichia coli.

scientific article published on 27 November 2003

Crystallization of a complex of Caenorhabditis elegans diadenosine tetraphosphate hydrolase and a non-hydrolysable substrate analogue, AppCH2ppA.

scientific article published on 21 February 2002

Crystallization of the Bacillus subtilis SPP1 bacteriophage helicase loader protein G39P.

scientific article published on 23 May 2003

Crystallization of the NADH-specific enoyl acyl carrier protein reductase from Brassica napus.

scientific article

Crystallization of the NADP-dependent beta-keto acyl carrier protein reductase from Escherichia coli

scientific article published on 01 May 1998

Crystallization of the NADP-dependent beta-keto acyl-carrier protein reductase from Brassica napus

scientific article published on 01 January 2000

Crystallization of the met repressor from Escherichia coli.

scientific article

Direct observation of DNA threading in flap endonuclease complexes

scientific article

Expression, purification and crystallization of the Plasmodium falciparum enoyl reductase

scientific article published on 27 June 2003

Identification and structural analysis of the tripartite α-pore forming toxin of Aeromonas hydrophila

scientific article published on 01 July 2019

Inhibitor binding studies on enoyl reductase reveal conformational changes related to substrate recognition

scientific article

Insights into the mechanisms of homologous recombination from the structure of RuvA.

scientific article published on December 1997

Insights into the structure and assembly of the Bacillus subtilis clamp-loader complex and its interaction with the replicative helicase

scientific article

Mechanism of action of diazaborines.

scientific article published on May 1998

Molecular basis of triclosan activity

scientific article

Molecular genetic analysis of enoyl-acyl carrier protein reductase inhibition by diazaborine.

scientific article

Mutagenesis of squash (Cucurbita moschata) glycerol-3-phosphate acyltransferase (GPAT) to produce an enzyme with altered substrate selectivity

scientific article published on 01 December 2000

Non-cytotoxic variants of the Kid protein that retain their auto-regulatory activity

scientific article published in September 2003

Plant glycerol-3-phosphate-1-acyltransferase (GPAT): structure selectivity studies

scientific article published on 01 December 2000

Rapid analysis of protein-nucleic acid complexes using MALDI TOF mass spectrometry and ion pair reverse phase liquid chromatography.

scientific article

RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.

scientific article published on 5 October 2006

Squash glycerol-3-phosphate (1)-acyltransferase. Alteration of substrate selectivity and identification of arginine and lysine residues important in catalytic activity.

scientific article published on 29 August 2002

Structural analysis of Bacillus subtilis SPP1 phage helicase loader protein G39P

scientific article (publication date: 25 April 2003)

Structural and functional characterization of NanU, a novel high-affinity sialic acid-inducible binding protein of oral and gut-dwelling Bacteroidetes species

scientific article

Structural basis for high-affinity adipate binding to AdpC (RPA4515), an orphan periplasmic-binding protein from the tripartite tricarboxylate transporter (TTT) family in Rhodopseudomonas palustris.

scientific article published on 30 October 2017

Structural basis of Synercid (quinupristin-dalfopristin) resistance in Gram-positive bacterial pathogens

scientific article (publication date: 8 August 2003)

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

scientific article

Structural insights into dynamics of RecU-HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state

scientific article

Structural similarities between Escherichia coli RuvA protein and other DNA-binding proteins and a mutational analysis of its binding to the holliday junction

scientific article published on 01 April 1998

Structural studies of fatty acyl-(acyl carrier protein) thioesters reveal a hydrophobic binding cavity that can expand to fit longer substrates.

scientific article

Studies ofToxoplasma gondiiandPlasmodium falciparumenoyl acyl carrier protein reductase and implications for the development of antiparasitic agents

scientific article

The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates

scientific article

The Met repressor-operator complex: DNA recognition by beta-strands.

scientific article published on July 1994

The RuvABC resolvasome

scientific article

The X-ray structure of Brassica napus beta-keto acyl carrier protein reductase and its implications for substrate binding and catalysis

scientific article

The X-ray structure of Escherichia coli enoyl reductase with bound NAD+ at 2.1 A resolution

scientific article published on 01 December 1998

The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms

scientific article

The molecular basis of endolytic activity of a multidomain alginate lyase from Defluviitalea phaphyphila, a representative of a new lyase family, PL39

scientific article published on 17 October 2019

The stalk region of the RecU resolvase is essential for Holliday junction recognition and distortion.

scientific article published on 12 May 2011

The structure of Bacillus subtilis RecU Holliday junction resolvase and its role in substrate selection and sequence-specific cleavage

scientific article published on 01 September 2005

The virulence factor PEB4 (Cj0596) and the periplasmic protein Cj1289 are two structurally related SurA-like chaperones in the human pathogen Campylobacter jejuni

scientific article

Triclosan inhibits the growth of Plasmodium falciparum and Toxoplasma gondii by inhibition of apicomplexan Fab I.

scientific article

X-ray crystallographic studies on butyryl-ACP reveal flexibility of the structure around a putative acyl chain binding site

scientific article

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