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List of works by Srinivas Aluru

A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem.

scientific article published on 8 April 2016

A comprehensive evaluation of long read error correction methods: supplementary

A fast adaptive algorithm for computing whole-genome homology maps

scholarly article by Chirag Jain published in September 2018

A greedy alignment-free distance estimator for phylogenetic inference

scientific article

A strategy for assembling the maize (Zea mays L.) genome

scientific article

A survey of error-correction methods for next-generation sequencing ⬇️

scientific article published on 06 April 2012

ALFRED: A Practical Method for Alignment-Free Distance Computation

scientific article published on 3 May 2016

An Algorithmic View on Multi-Related-Segments: A Unifying Model for Approximate Common Interval

An SVM-based method for assessment of transcription factor-DNA complex models

Brent’s Theorem

article

Consensus genetic maps as median orders from inconsistent sources

scientific article published in April 2008

Consensus genetic maps: a graph theoretic approach.

scientific article published on January 2005

Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification ⬇️

Detailed analysis of a contiguous 22-Mb region of the maize genome

scientific article

Discovering Motifs in Biological Sequences Using the Micron Automata Processor

scientific article published in January 2016

Efficient algorithms and software for detection of full-length LTR retrotransposons

scientific article published in April 2006

Efficient algorithms and software for detection of full-length LTR retrotransposons.

scientific article published in January 2005

Efficient clustering of large EST data sets on parallel computers

scientific article

Efficient detection of viral transmissions with Next-Generation Sequencing data

scientific article

Fast and accurate construction of ultra-dense consensus genetic maps using evolution strategy optimization

scientific article published on 13 April 2015

Guest Editors' Introduction, Special Issue on High-Performance Computational Biology

scientific article published in November 2008

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

scientific article published in Nature Communications

In search of perfect reads

scientific article published on 7 December 2015

Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems

scientific article published on 9 October 2017

Large-scale metagenomic sequence clustering on map-reduce clusters

scientific article published on 25 December 2012

Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public Repositories

scientific article

PCAP: a whole-genome assembly program

scientific article

Parallel Framework for Dimensionality Reduction of Large-Scale Datasets

article published in 2015

Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ Coprocessor.

scientific article published on September 2015

Parallel short sequence assembly of transcriptomes

scientific article

Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes

scientific article

Repeat-aware modeling and correction of short read errors

scientific article

Reptile: representative tiling for short read error correction ⬇️

scientific article published on August 16, 2010

Reverse engineering and analysis of large genome-scale gene networks

scientific article published on 4 October 2012

SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

scientific article

Space-conserving optimal DNA-protein alignment.

scientific article published in January 2004

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