List of works - Kim Handley

A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei

scientific article published on 11 December 2015

Bacterial colonization and succession in a newly opened hospital.

scientific article

Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer

scholarly article

Biogeochemical controls on microbial diversity in seafloor sulphidic sediments.

scientific article

Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species ⬇️

scientific article published on May 22, 2013

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community

scientific article published on 29 November 2012

Character, Analysis, and Preservation of Biogenicity in Terrestrial Siliceous Stromatolites from Geothermal Settings

article

Correction: Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool

scientific article published on 19 January 2022

Determining Microbial Roles in Ecosystem Function: Redefining Microbial Food Webs and Transcending Kingdom Barriers

scientific article published on 04 June 2019

Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

scientific article

Divalent metal adsorption by the thermophile Anoxybacillus flavithermus in single and multi-metal systems

scholarly article

Effect of iron redox transformations on arsenic solid-phase associations in an arsenic-rich, ferruginous hydrothermal sediment

scholarly article by Kim M. Handley et al published February 2013 in Geochimica et Cosmochimica Acta

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface

scientific article

Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudes.

scientific article published on 15 May 2017

From pine to pasture: land use history has long-term impacts on soil bacterial community composition and functional potential

scientific article published on 01 April 2020

Functional diversity of bacteria in a ferruginous hydrothermal sediment

scientific article

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

scientific article

Genome Sequence of Hydrothermal Arsenic-Respiring Bacterium Marinobacter santoriniensis NKSG1T.

scientific article

Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of <i>Microcoleus</i>

scientific article published on 26 October 2021

Genome reduction in an abundant and ubiquitous soil bacterial lineage

Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

scientific article published on 31 October 2016

Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs

scientific article published on 11 June 2021

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment

scientific article

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont

scientific article published on 07 May 2019

Lifestyle evolution in cyanobacterial symbionts of sponges

scientific article published on 2 June 2015

Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool

scientific article published on 07 December 2021

Longitudinal analysis of microbial interaction between humans and the indoor environment

scientific article

Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment

scientific article

Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment

scientific article published in July 2009

Metabolic Diversity and Aero-Tolerance in Anammox Bacteria from Geochemically Distinct Aquifers

scientific article published on 22 February 2022

Metabolic Reconstruction and Modeling Microbial Electrosynthesis

scientific article published on 21 August 2017

Metabolic Reconstruction and Modeling Microbial Electrosynthesis

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

scientific article

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

scientific article

Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat

scientific article published on 22 May 2015

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

scientific article published in 2021

Nitrogen cycling and microbial cooperation in the terrestrial subsurface

scientific article published in 2022

Opportunities for modern genetic technologies to maintain and enhance Aotearoa New Zealand’s bioheritage

scientific article

Redox cycling of arsenic by the hydrothermal marine bacterium Marinobacter santoriniensis

scientific article

Responses of Microbial Communities to Hydrocarbon Exposures

article

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments

scientific article

Silicifying biofilm exopolymers on a hot-spring microstromatolite: templating nanometer-thick laminae

scientific article

Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla

scientific article

Speciation and reactivity of uranium products formed during in situ bioremediation in a shallow alluvial aquifer.

scientific article

Stromatolitic digitate sinters form under wide-ranging physicochemical conditions with diverse hot spring microbial communities

scientific article published on 26 April 2020

The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome

scientific article

Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium

scientific article published on 18 May 2020

Tracing Biosignature Preservation of Geothermally Silicified Microbial Textures into the Geological Record

scientific article published in October 2015

Ultra-small bacteria and archaea exhibit genetic flexibility towards groundwater oxygen content, and adaptations for attached or planktonic lifestyles

scientific article published in 2023

Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration.

scientific article published on 10 June 2013

List of works by Kim Handley

A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei

Bacterial colonization and succession in a newly opened hospital.

Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer

Biogeochemical controls on microbial diversity in seafloor sulphidic sediments.

Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species ⬇️

Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community

Character, Analysis, and Preservation of Biogenicity in Terrestrial Siliceous Stromatolites from Geothermal Settings

Correction: Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool

Determining Microbial Roles in Ecosystem Function: Redefining Microbial Food Webs and Transcending Kingdom Barriers

Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points.

Divalent metal adsorption by the thermophile Anoxybacillus flavithermus in single and multi-metal systems

Effect of iron redox transformations on arsenic solid-phase associations in an arsenic-rich, ferruginous hydrothermal sediment

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface

Following Rapoport's Rule: the geographic range and genome size of bacterial taxa decline at warmer latitudes.

From pine to pasture: land use history has long-term impacts on soil bacterial community composition and functional potential

Functional diversity of bacteria in a ferruginous hydrothermal sediment

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

Genome Sequence of Hydrothermal Arsenic-Respiring Bacterium Marinobacter santoriniensis NKSG1T.

Genome Streamlining, Plasticity, and Metabolic Versatility Distinguish Co-occurring Toxic and Nontoxic Cyanobacterial Strains of <i>Microcoleus</i>

Genome reduction in an abundant and ubiquitous soil bacterial lineage

Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

Genomic adaptations enabling Acidithiobacillus distribution across wide-ranging hot spring temperatures and pHs

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont

Lifestyle evolution in cyanobacterial symbionts of sponges

Lineage-specific energy and carbon metabolism of sponge symbionts and contributions to the host carbon pool

Longitudinal analysis of microbial interaction between humans and the indoor environment

Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment

Marinobacter santoriniensis sp. nov., an arsenate-respiring and arsenite-oxidizing bacterium isolated from hydrothermal sediment

Metabolic Diversity and Aero-Tolerance in Anammox Bacteria from Geochemically Distinct Aquifers

Metabolic Reconstruction and Modeling Microbial Electrosynthesis

Metabolic Reconstruction and Modeling Microbial Electrosynthesis

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling

Nitrogen cycling and microbial cooperation in the terrestrial subsurface

Opportunities for modern genetic technologies to maintain and enhance Aotearoa New Zealand’s bioheritage

Redox cycling of arsenic by the hydrothermal marine bacterium Marinobacter santoriniensis

Responses of Microbial Communities to Hydrocarbon Exposures

Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments

Silicifying biofilm exopolymers on a hot-spring microstromatolite: templating nanometer-thick laminae

Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla

Speciation and reactivity of uranium products formed during in situ bioremediation in a shallow alluvial aquifer.

Stromatolitic digitate sinters form under wide-ranging physicochemical conditions with diverse hot spring microbial communities

The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome

Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium

Tracing Biosignature Preservation of Geothermally Silicified Microbial Textures into the Geological Record

Ultra-small bacteria and archaea exhibit genetic flexibility towards groundwater oxygen content, and adaptations for attached or planktonic lifestyles

Vanadate and acetate biostimulation of contaminated sediments decreases diversity, selects for specific taxa, and decreases aqueous V5+ concentration.