List of works - Makoto Taiji

A fluorogenic peptide probe developed by in vitro selection using tRNA carrying a fluorogenic amino acid

scientific article published on 9 December 2013

A leukotriene C4 synthase inhibitor with the backbone of 5-(5-methylene-4-oxo-4,5-dihydrothiazol-2-ylamino) isophthalic acid.

scientific article published on 31 January 2013

Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems

scientific article published in January 2009

Bead-like passage of chloride ions through ClC chloride channels

scientific article published on 09 November 2005

Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism

scientific article

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach

scientific article published on 01 November 2009

Enhanced exchange algorithm without detailed balance condition for replica exchange method

scientific article published in June 2013

Experimental identification and theoretical analysis of a thermally stabilized green fluorescent protein variant.

scientific article

FGF9 monomer-dimer equilibrium regulates extracellular matrix affinity and tissue diffusion

scientific article published on 15 February 2009

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

Femtosecond time-resolved interferometry for the determination of complex nonlinear susceptibility.

scientific article

Folding Dynamics of 10-Residue β-Hairpin Peptide Chignolin

article

Free-Energy Landscapes of Protein Domain Movements upon Ligand Binding

scientific article published on 24 May 2011

High-performance drug discovery: computational screening by combining docking and molecular dynamics simulations

scientific article

Inaccessibility in online learning of recurrent neural networks

scientific article published on 13 October 2004

Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution

scientific article

Ligand Diffusion on Protein Surface Observed in Molecular Dynamics Simulation

article

MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations

scientific article published on August 2014

Molecular dynamics simulations reveal that Tyr-317 phosphorylation reduces Shc binding affinity for phosphotyrosyl residues of epidermal growth factor receptor

scientific article published on March 2009

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides

scientific article published in May 2003

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

scientific article published on May 2009

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

scientific article published on 20 May 2009

Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides.

scientific article

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

scientific article published on 17 October 2009

Structural characteristics of hydration sites in lysozyme

scientific article published on 23 February 2011

Structure and dynamics of RNA polymerase II elongation complex

article

Tyr-317 phosphorylation increases Shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations.

scientific article published on 12 November 2003

List of works by Makoto Taiji

A fluorogenic peptide probe developed by in vitro selection using tRNA carrying a fluorogenic amino acid

A leukotriene C4 synthase inhibitor with the backbone of 5-(5-methylene-4-oxo-4,5-dihydrothiazol-2-ylamino) isophthalic acid.

Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems

Bead-like passage of chloride ions through ClC chloride channels

Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach

Enhanced exchange algorithm without detailed balance condition for replica exchange method

Experimental identification and theoretical analysis of a thermally stabilized green fluorescent protein variant.

FGF9 monomer-dimer equilibrium regulates extracellular matrix affinity and tissue diffusion

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

Femtosecond time-resolved interferometry for the determination of complex nonlinear susceptibility.

Folding Dynamics of 10-Residue β-Hairpin Peptide Chignolin

Free-Energy Landscapes of Protein Domain Movements upon Ligand Binding

High-performance drug discovery: computational screening by combining docking and molecular dynamics simulations

Inaccessibility in online learning of recurrent neural networks

Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution

Ligand Diffusion on Protein Surface Observed in Molecular Dynamics Simulation

MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations

Molecular dynamics simulations reveal that Tyr-317 phosphorylation reduces Shc binding affinity for phosphotyrosyl residues of epidermal growth factor receptor

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides.

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

Structural characteristics of hydration sites in lysozyme

Structure and dynamics of RNA polymerase II elongation complex

Tyr-317 phosphorylation increases Shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations.