List of works - Julin N. Maloof

A High-Throughput Method for Illumina RNA-Seq Library Preparation ⬇️

scientific article published on August 28, 2012

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification

scientific article published on 10 August 2016

A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response.

scientific article

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape

scientific article (publication date: 2014)

Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light

scholarly article

An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis

scientific article published on December 2004

Antagonistic multilevel selection on size and architecture in variable density settings

scientific article published in January 2007

BBX32, an Arabidopsis B-Box Protein, Functions in Light Signaling by Suppressing HY5-Regulated Gene Expression and Interacting with STH2/BBX21 ⬇️

scientific article published on June 1, 2011

Building integrated models of plant growth and development

scientific article published in June 2003

COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis

article

Circadian oscillation of gibberellin signaling in Arabidopsis

scientific article

Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.

scientific article published on 03 August 2009

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

scientific article published on 26 June 2013

Diurnal regulation of plant growth.

scientific article published on March 2006

Domestication selected for deceleration of the circadian clock in cultivated tomato.

scientific article published on 16 November 2015

Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures

scientific article

Establishment and inheritance of minichromosomes from Arabidopsis haploid induction

scientific article published in 2023

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

scientific article

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716.

scientific article

Floral genetic architecture: an examination of QTL architecture underlying floral (co)variation across environments

scientific article

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

scientific article (publication date: 19 August 2015)

Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana

scientific article published on 01 March 2010

Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise ⬇️

scientific article published on September 29, 2011

Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis

scientific article

Genomic approaches to analyzing natural variation in Arabidopsis thaliana

scientific article published in December 2003

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

scientific article

Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato.

scientific article

Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development

scientific article published on 12 September 2019

Leaf shape is a predictor of fruit quality and cultivar performance in tomato

scientific article published on 11 February 2020

LeafJ: an ImageJ plugin for semi-automated leaf shape measurement

scientific article

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

scientific article

Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana

scientific article

Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape

scientific article

Native environment modulates leaf size and response to simulated foliar shade across wild tomato species

scientific article

Natural variation in light sensitivity of Arabidopsis

scientific article published in December 2001

Natural variation in phytochrome signaling.

scientific article

Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth.

scientific article

Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis

scientific article

Network analysis reveals a role for salicylic acid pathway components in shade avoidance

article

Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

scientific article published on 22 February 2011

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating

scientific article published on 12 March 2014

PIF genes mediate the effect of sucrose on seedling growth dynamics.

scientific article

Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors.

scientific article

Plant development: slowing root growth naturally.

scientific article

Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment

scientific article published on 22 May 2009

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing

scientific article

QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines

scientific article

Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping

scientific article published on 27 February 2012

Reassess the t Test: Interact with All Your Data via ANOVA.

scientific article

Recent advances in regulation of flowering ⬇️

scientific article published on February 11, 2010

Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

scientific article published on 30 September 2014

Rhythmic growth explained by coincidence between internal and external cues.

scientific article published on 24 June 2007

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution

scientific article published on 3 July 2009

Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.

scientific article published on 15 April 2015

Structured Light-Based 3D Reconstruction System for Plants.

scientific article

The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana

scientific article published on 28 May 2006

The Role of a Class III GA 2-Oxidase in Tomato Internode Elongation

scientific article published on 05 January 2019

The developmental trajectory of leaflet morphology in wild tomato species

scientific article published on 12 January 2012

The extent of linkage disequilibrium in Arabidopsis thaliana

scientific article

The genome of the stress-tolerant wild tomato species Solanum pennellii.

scientific article published on 27 July 2014

Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant

scientific article published on 07 March 2019

Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.

scientific article

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

scientific article

List of works by Julin N. Maloof

A High-Throughput Method for Illumina RNA-Seq Library Preparation ⬇️

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification

A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response.

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape

Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light

An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis

Antagonistic multilevel selection on size and architecture in variable density settings

BBX32, an Arabidopsis B-Box Protein, Functions in Light Signaling by Suppressing HY5-Regulated Gene Expression and Interacting with STH2/BBX21 ⬇️

Building integrated models of plant growth and development

COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis

Circadian oscillation of gibberellin signaling in Arabidopsis

Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

Diurnal regulation of plant growth.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures

Establishment and inheritance of minichromosomes from Arabidopsis haploid induction

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716.

Floral genetic architecture: an examination of QTL architecture underlying floral (co)variation across environments

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana

Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic Noise ⬇️

Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis

Genomic approaches to analyzing natural variation in Arabidopsis thaliana

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato.

Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development

Leaf shape is a predictor of fruit quality and cultivar performance in tomato

LeafJ: an ImageJ plugin for semi-automated leaf shape measurement

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana

Modeling development and quantitative trait mapping reveal independent genetic modules for leaf size and shape

Native environment modulates leaf size and response to simulated foliar shade across wild tomato species

Natural variation in light sensitivity of Arabidopsis

Natural variation in phytochrome signaling.

Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth.

Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis

Network analysis reveals a role for salicylic acid pathway components in shade avoidance

Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating

PIF genes mediate the effect of sucrose on seedling growth dynamics.

Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors.

Plant development: slowing root growth naturally.

Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing

QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines

Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping

Reassess the t Test: Interact with All Your Data via ANOVA.

Recent advances in regulation of flowering ⬇️

Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Rhythmic growth explained by coincidence between internal and external cues.

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution

Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.

Structured Light-Based 3D Reconstruction System for Plants.

The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana

The Role of a Class III GA 2-Oxidase in Tomato Internode Elongation

The developmental trajectory of leaflet morphology in wild tomato species

The extent of linkage disequilibrium in Arabidopsis thaliana

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant

Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.