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List of works by Pedro de Atauri

A data integration methodology for systems biology

scientific article

A data integration methodology for systems biology: experimental verification

scientific article

A method for estimating stochastic noise in large genetic regulatory networks

scientific article

Advantages and disadvantages of aggregating fluxes into synthetic and degradative fluxes when modelling metabolic pathways

scientific article published in October 1999

Carbon metabolism and the sign of control coefficients in metabolic adaptations underlying K-ras transformation.

scientific article published on 23 December 2010

ChainRank, a chain prioritisation method for contextualisation of biological networks

scientific article published on 5 January 2016

Characterization of the first described mutation of human red blood cell phosphoglycerate mutase

scientific article published on 10 December 2004

Characterization of the transit and transition times for a pathway unit of Michaelis–Menten mechanism

scientific article published on 01 September 2003

De novo MYC addiction as an adaptive response of cancer cells to CDK4/6 inhibition

scientific article published on 4 October 2017

Dependence of control coefficient distribution on the boundaries of a metabolic system: a generalized analysis of the effects of additional input and output reactions to a linear pathway

scientific article published in March 2002

Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast

scientific article published on 27 August 2006

Dynamic simulation of pollutant effects on the threonine pathway in Escherichia coli

scientific article published in May 2003

Effects of cadmium and mercury on the upper part of skeletal muscle glycolysis in mice

scientific article (publication date: 2014)

Effects of feedback inhibition on transit time in a linear pathway of Michaelis–Menten-type reactions

scientific article published on 01 March 1998

Enzymatic and metabolic characterization of the phosphoglycerate kinase deficiency associated with chronic hemolytic anemia caused by the PGK-Barcelona mutation

scientific article published on 26 January 2011

Evolution of design principles in biochemical networks

scientific article published on 01 June 2004

Fluxomics

scientific article (publication date: 25 September 2013)

Glycerol metabolic conversion to succinic acid using Actinobacillus succinogenes

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data

scientific article

In silico strategy to rationally engineer metabolite production: A case study for threonine in Escherichia coli

scientific article published in June 2009

In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer.

scientific article published on 30 October 2017

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

scientific article published in 2019

Is the regulation of galactose 1-phosphate tuned against gene expression noise?

scientific article published on April 2005

Mathematical modelling of the urea cycle. A numerical investigation into substrate channelling

scientific article published on October 2003

Metabolic Reprogramming and Dependencies Associated with Epithelial Cancer Stem Cells Independent of the Epithelial-Mesenchymal Transition Program

scientific article published on 2 February 2016

Metabolic control analysis aimed at the ribose synthesis pathways of tumor cells: a new strategy for antitumor drug development

scientific article published in January 2002

Metabolic control analysis in drug discovery and disease

scientific article

Metabolic homeostasis in the human erythrocyte: in silico analysis

scientific article published on 19 October 2005

Metabolic network adaptations in cancer as targets for novel therapies

scientific article published on October 2010

Metabolomics - the stethoscope for the 21st century

scientific article published on 03 December 2020

Multicriteria optimization of biochemical systems by linear programming: application to production of ethanol by Saccharomyces cerevisiae

scientific article

Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients.

scientific article published on 20 February 2018

Oncogenic regulation of tumor metabolic reprogramming

scientific article published on September 2016

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

scholarly article by Kristian Peters et al published 7 December 2018 in GigaScience

Relevance of the MEK/ERK signaling pathway in the metabolism of activated macrophages: a metabolomic approach.

scientific article

Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes

scientific article published on 18 February 2015

Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.

scientific article

The changes in the energy metabolism of human muscle induced by training.

scientific article published on 5 October 2007

Thermodynamically constrained Flux and Control Analysis of Escherichia coli

scholarly article by Liliana Angeles-Martineza et al published 2012 in Computer Aided Chemical Engineering

Untargeted metabolomics reveals distinct metabolic reprogramming in endothelial cells co-cultured with CSC and non-CSC prostate cancer cell subpopulations.

scientific article published on 21 February 2018

Workforce preparation: the Biohealth computing model for Master and PhD students

scientific article

p13CMFA: Parsimonious 13C metabolic flux analysis

scientific article published on 06 September 2019

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