List of works - Daniel Kavan

1H, 13C and 15N resonance assignments of human DCL-1 (CD302) extracellular domain.

scientific article published on 2 January 2016

A chemoenzymatic route to mannosamine derivatives bearing different N-acyl groups

scientific article published in January 2005

Accessibility changes within diphtheria toxin T domain upon membrane penetration probed by hydrogen exchange and mass spectrometry.

scientific article

Accessibility changes within diphtheria toxin T domain when in the functional molten globule state, as determined using hydrogen/deuterium exchange measurements.

scientific article

Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes

scientific article published on 01 September 2019

CYCLONE--a utility for de novo sequencing of microbial cyclic peptides.

scientific article

Carboxylated calixarenes bind strongly to CD69 and protect CD69(+) killer cells from suicidal cell death induced by tumor cell surface ligands

scientific article published on 11 January 2010

Chemical Cross-Linking and H/D Exchange for Fast Refinement of Protein Crystal Structure

scientific article published on 23 December 2011

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

scientific article published on 01 May 2010

Crystallization and preliminary crystallographic characterization of the iron-regulated outer membrane lipoprotein FrpD from Neisseria meningitidis

scientific article published on 28 August 2010

Cytotoxic Lipopeptide Muscotoxin A, Isolated from Soil Cyanobacterium Desmonostoc muscorum, Permeabilizes Phospholipid Membranes by Reducing Their Fluidity.

scientific article published on 26 January 2015

Deciphering Dorin M glycosylation by mass spectrometry.

scientific article published on January 2008

Effect of posttranslational modifications on enzyme function and assembly.

scientific article published on 17 April 2013

Erratum to: Purification and characterization of a nitrilase from Aspergillus niger K10.

scientific article published in April 2013

Heterologous expression, purification and characterization of nitrilase from Aspergillus niger K10

scientific article

High-level expression of soluble form of mouse natural killer cell receptor NKR-P1C(B6) in Escherichia coli.

scientific article published in February 2011

Interdomain electron transfer in cellobiose dehydrogenase is governed by surface electrostatics.

scientific article published on 13 November 2016

Isoform-specific cleavage of 14-3-3 proteins in apoptotic JURL-MK1 cells.

scientific article

LC MALDI-TOF MS/MS and LC ESI FTMS analyses of HLA-B27 associated peptides isolated from peripheral blood cells.

scientific article

Large Propeptides of Fungal β-N-Acetylhexosaminidases Are Novel Enzyme Regulators That Must Be Intracellularly Processed to Control Activity, Dimerization, and Secretion into the Extracellular Environment†

scientific article published on 16 February 2007

LinX: A Software Tool for Uncommon Cross-Linking Chemistry

scientific article published on 04 March 2021

Lymphocyte activation receptors: new structural paradigms in group V of C-type animal lectins

scientific journal article

MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex

scientific article published on 26 September 2019

Mapping protein structural changes by quantitative cross-linking.

scientific article

Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds.

scientific article

Novel Entropically Driven Conformation-specific Interactions with Tomm34 Protein Modulate Hsp70 Protein Folding and ATPase Activities ⬇️

scientific article published on 4 March 2016

Pharmacological inhibition of fatty-acid oxidation synergistically enhances the effect of l-asparaginase in childhood ALL cells.

scientific article published on 4 August 2015

Planar Functionalized Surfaces for Direct Immunoaffinity Desorption/Ionization Mass Spectrometry

scientific article published on 19 October 2015

Preparation of soluble isotopically labeled NKp30, a human natural cytotoxicity receptor, for structural studies using NMR

scientific article published on 08 October 2012

Proteomic analysis of porcine oocytes during in vitro maturation reveals essential role for the ubiquitin C-terminal hydrolase-L1.

scientific article published in October 2007

Purification and characterization of a nitrilase from Aspergillus niger K10

scientific article published on 24 October 2006

Retraction notice to “Carboxylated calixarenes bind strongly to CD69 and protect CD69+ killer cells from suicidal cell death induced by tumor cell surface ligands” [Bioorg. Med. Chem. 18 (4) (2010) 1434–1440]

scientific article published on 01 June 2014

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

scientific article published on 15 April 2014

Retraction of “Synthesis of Multivalent Glycoconjugates Containing the Immunoactive LELTE Peptide: Effect of Glycosylation on Cellular Activation and Natural Killing by Human Peripheral Blood Mononuclear Cells”

scientific article published in 2014

Retraction: Heterologous expression, purification and characterization of nitrilase from Aspergillus niger K10

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

scientific article published on 5 June 2014

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

scientific article

Structural characterization of the heme-based oxygen sensor, AfGcHK, its interactions with the cognate response regulator, and their combined mechanism of action in a bacterial two-component signaling system.

scientific article

Structural insight into the calcium ion modulated interdomain electron transfer in cellobiose dehydrogenase

scientific article published on 08 April 2015

Synthesis of multivalent glycoconjugates containing the immunoactive LELTE peptide: effect of glycosylation on cellular activation and natural killing by human peripheral blood mononuclear cells.

scientific article

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

scientific article

Utilization of high-accuracy FTICR-MS data in protein quantitation experiments

scientific article published in November 2009

mMass 3: a cross-platform software environment for precise analysis of mass spectrometric data.

scientific article

List of works by Daniel Kavan

1H, 13C and 15N resonance assignments of human DCL-1 (CD302) extracellular domain.

A chemoenzymatic route to mannosamine derivatives bearing different N-acyl groups

Accessibility changes within diphtheria toxin T domain upon membrane penetration probed by hydrogen exchange and mass spectrometry.

Accessibility changes within diphtheria toxin T domain when in the functional molten globule state, as determined using hydrogen/deuterium exchange measurements.

Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes

CYCLONE--a utility for de novo sequencing of microbial cyclic peptides.

Carboxylated calixarenes bind strongly to CD69 and protect CD69(+) killer cells from suicidal cell death induced by tumor cell surface ligands

Chemical Cross-Linking and H/D Exchange for Fast Refinement of Protein Crystal Structure

Cooperation between subunits is essential for high-affinity binding of N-acetyl-D-hexosamines to dimeric soluble and dimeric cellular forms of human CD69

Crystallization and preliminary crystallographic characterization of the iron-regulated outer membrane lipoprotein FrpD from Neisseria meningitidis

Cytotoxic Lipopeptide Muscotoxin A, Isolated from Soil Cyanobacterium Desmonostoc muscorum, Permeabilizes Phospholipid Membranes by Reducing Their Fluidity.

Deciphering Dorin M glycosylation by mass spectrometry.

Effect of posttranslational modifications on enzyme function and assembly.

Erratum to: Purification and characterization of a nitrilase from Aspergillus niger K10.

Heterologous expression, purification and characterization of nitrilase from Aspergillus niger K10

High-level expression of soluble form of mouse natural killer cell receptor NKR-P1C(B6) in Escherichia coli.

Interdomain electron transfer in cellobiose dehydrogenase is governed by surface electrostatics.

Isoform-specific cleavage of 14-3-3 proteins in apoptotic JURL-MK1 cells.

LC MALDI-TOF MS/MS and LC ESI FTMS analyses of HLA-B27 associated peptides isolated from peripheral blood cells.

Large Propeptides of Fungal β-N-Acetylhexosaminidases Are Novel Enzyme Regulators That Must Be Intracellularly Processed to Control Activity, Dimerization, and Secretion into the Extracellular Environment†

LinX: A Software Tool for Uncommon Cross-Linking Chemistry

Lymphocyte activation receptors: new structural paradigms in group V of C-type animal lectins

MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex

Mapping protein structural changes by quantitative cross-linking.

Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds.

Novel Entropically Driven Conformation-specific Interactions with Tomm34 Protein Modulate Hsp70 Protein Folding and ATPase Activities ⬇️

Pharmacological inhibition of fatty-acid oxidation synergistically enhances the effect of l-asparaginase in childhood ALL cells.

Planar Functionalized Surfaces for Direct Immunoaffinity Desorption/Ionization Mass Spectrometry

Preparation of soluble isotopically labeled NKp30, a human natural cytotoxicity receptor, for structural studies using NMR

Proteomic analysis of porcine oocytes during in vitro maturation reveals essential role for the ubiquitin C-terminal hydrolase-L1.

Purification and characterization of a nitrilase from Aspergillus niger K10

Retraction notice to “Carboxylated calixarenes bind strongly to CD69 and protect CD69+ killer cells from suicidal cell death induced by tumor cell surface ligands” [Bioorg. Med. Chem. 18 (4) (2010) 1434–1440]

Retraction of Cooperation between Subunits Is Essential for High-Affinity Binding of N-Acetyl-d-hexosamines to Dimeric Soluble and Dimeric Cellular Forms of Human CD69

Retraction of “Synthesis of Multivalent Glycoconjugates Containing the Immunoactive LELTE Peptide: Effect of Glycosylation on Cellular Activation and Natural Killing by Human Peripheral Blood Mononuclear Cells”

Retraction: Heterologous expression, purification and characterization of nitrilase from Aspergillus niger K10

Retraction: Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69⁺ killer lymphocytes upon dimerization via a hydrophilic flexible linker. Journal of Medicinal Chemistry 20

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

Structural characterization of the heme-based oxygen sensor, AfGcHK, its interactions with the cognate response regulator, and their combined mechanism of action in a bacterial two-component signaling system.

Structural insight into the calcium ion modulated interdomain electron transfer in cellobiose dehydrogenase

Synthesis of multivalent glycoconjugates containing the immunoactive LELTE peptide: effect of glycosylation on cellular activation and natural killing by human peripheral blood mononuclear cells.

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

Utilization of high-accuracy FTICR-MS data in protein quantitation experiments

mMass 3: a cross-platform software environment for precise analysis of mass spectrometric data.