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List of works by Gary L Andersen

A framework for human microbiome research

scientific article

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

scientific article

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

scientific article published on 22 August 2008

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

scientific article (publication date: March 2012)

Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants

scientific article

Animal-to-animal variation in fecal microbial diversity among beef cattle

scientific article

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

scientific article published in September 2006

Application of phylogenetic microarray analysis to discriminate sources of fecal pollution.

scientific article published on 04 April 2012

Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92.

scientific article published on February 2008

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool

scientific article

Bacterial Community Structure in Geographically Distributed Biological Wastewater Treatment Reactors

scientific article published on 01 October 2010

Bacterial Diversity in the Cecum of the World’s Largest Living Rodent (Hydrochoerus hydrochaeris)

scientific article published on 15 November 2011

Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia

article

Bacterial communities in commercial aircraft high-efficiency particulate air (HEPA) filters assessed by PhyloChip analysis ⬇️

scientific article published on June 8, 2012

Bacterial community structure corresponds to performance during cathodic nitrate reduction

scientific article

Bacterial community structure transformed after thermophilically composting human waste in Haiti.

scientific article

Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing

scientific article

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

scientific article

Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland

scientific article

Bacterial diversity of weathered terrestrial Icelandic volcanic glasses.

scientific article

Biodegradation of dispersed Macondo crude oil by indigenous Gulf of Mexico microbial communities.

scientific article

Biogeography of bacterioplankton in the tropical seawaters of Singapore

scientific article published on 15 January 2013

Caulobacter crescentus as a whole-cell uranium biosensor

scientific article

Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil

scientific article

Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem

scientific article

Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators

scientific article

Chronic kidney disease alters intestinal microbial flora

scientific article published on 19 September 2012

Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains

scientific article published on 21 March 2008

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

scientific article

Comparing bacterial community composition between healthy and white plague-like disease states in Orbicella annularis using PhyloChip™ G3 microarrays.

scientific article

Comparing bacterial community composition of healthy and dark spot-affected Siderastrea siderea in Florida and the Caribbean

scientific article

Comparison of fecal biota from specific pathogen free and feral mice

scientific article published on 27 October 2006

Comparison of innovative molecular approaches and standard spore assays for assessment of surface cleanliness

scientific article

Comparison of the fecal microbiota in feral and domestic goats

scientific article published on 21 December 2011

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

scientific article

Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen

scientific article

Complexity and variability of gut commensal microbiota in polyphagous lepidopteran larvae

scientific article

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.

scientific article published in August 2003

Comprehensive census of bacteria in clean rooms by using DNA microarray and cloning methods

scientific article

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

scientific article

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

scientific article published on 7 August 2015

Coupling genetic and chemical microbiome profiling reveals heterogeneity of archaeome and bacteriome in subsurface biofilms that are dominated by the same archaeal species

scientific article (publication date: 2014)

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

scientific article

Deep-sea oil plume enriches indigenous oil-degrading bacteria

scientific article

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.

scientific article

Developing microbe-plant interactions for applications in plant-growth promotion and disease control, production of useful compounds, remediation and carbon sequestration

scientific article published on 23 April 2009

Development of a high-volume aerosol collection system for the identification of air-borne micro-organisms

scientific article

Diversity of anaerobic microbes in spacecraft assembly clean rooms

scientific article

Diversity of bacterioplankton in contrasting Tibetan lakes revealed by high-density microarray and clone library analysis

scientific article

Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity

scientific article published on 21 January 2015

Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities

scientific article

Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria.

scientific article

Environmental determinants of and impact on childhood asthma by the bacterial community in household dust

scientific article

Environmental genomics reveals a single-species ecosystem deep within Earth

scientific article

Environmental microarray analyses of Antarctic soil microbial communities

scientific article

Establishment of uncharacterized plasmids in Escherichia coli by in vitro transposition.

scientific article published in December 2002

Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms

scientific article

Evaluation of molecular community analysis methods for discerning fecal sources and human waste

scientific article published on 5 July 2013

Expansion of urease- and uricase-containing, indole- and p-cresol-forming and contraction of short-chain fatty acid-producing intestinal microbiota in ESRD.

scientific article

Functional biogeography as evidence of gene transfer in hypersaline microbial communities

scientific article

Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis

scientific article

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.

scientific article published on 19 January 2016

Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation

scientific article published on 16 December 2011

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

scientific article (publication date: July 2006)

High-density 16S microarray and clone library-based microbial community composition of the Phoenix spacecraft assembly clean room

scientific article

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment

scientific article

High-density microarray of small-subunit ribosomal DNA probes

scientific article

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

scientific article

Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils.

scientific article

Identification by Subtractive Hybridization of Sequences Specific for Salmonella enterica Serovar Enteritidis ⬇️

scientific article published on November 1, 2001

Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen

scientific article

Identification of nucleotide sequences for the specific and rapid detection of Yersinia pestis.

scientific article

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

scientific article

Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs).

scientific article

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray

scientific article

Intestinal microbiota as novel biomarkers of prior radiation exposure

scientific article published on 23 March 2012

Long-term sustainability of a high-energy, low-diversity crustal biome

scientific article

Methane-Oxidizing Bacteria Shunt Carbon to Microbial Mats at a Marine Hydrocarbon Seep ⬇️

scientific article published on 27 February 2017

Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico

scientific article

Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota

scientific article published on 13 April 2010

Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes

scientific article

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill

scientific article

Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments

scientific article

Microbial community responses to organophosphate substrate additions in contaminated subsurface sediments

scientific article

Microbial community structures of novel Icelandic hot spring systems revealed by PhyloChip G3 analysis

scientific article

Microbial diversity in uranium mining-impacted soils as revealed by high-density 16S microarray and clone library

scientific article

Microbial secondary succession in a chronosequence of chalk grasslands

scientific article

Microbial source tracking in impaired watersheds using PhyloChip and machine-learning classification

scientific article published on 23 August 2016

New perspectives on viable microbial communities in low-biomass cleanroom environments

scientific article published on 11 October 2012

Olive-mill wastewater bacterial communities display a cultivar specific profile

scientific article

PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip

scientific article

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa

scientific article

PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology

scientific article

Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site

scientific article

Prokaryotic community profiles at different operational stages of a Greek solar saltern

scientific article published on 14 October 2008

PyNAST: a flexible tool for aligning sequences to a template alignment

scientific article (publication date: 15 January 2010)

Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system

scientific article

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments

scientific article

Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray

scientific article

Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill

scientific article published on 10 October 2017

Selective progressive response of soil microbial community to wild oat roots

scientific article

Sequence-specific identification of 18 pathogenic microorganisms using microarray technology.

scientific article

Shifts in the phylogenetic structure and functional capacity of soil microbial communities follow alteration of native tussock grassland ecosystems

scholarly article by Steven A. Wakelin et al published February 2013 in Soil Biology and Biochemistry

Simrank: Rapid and sensitive general-purpose k-mer search tool

scientific article

Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders

scientific article

Single-Nucleotide Polymorphisms Reveal Spatial Diversity Among Clones of Yersinia pestis During Plague Outbreaks in Colorado and the Western United States

scientific article published on May 2015

Soil microbial community successional patterns during forest ecosystem restoration.

scientific article

Structure, function and diversity of the healthy human microbiome

scientific article

Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico

scientific article

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

scientific article published on September 2011

Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm

scientific article

Temperature and injection water source influence microbial community structure in four Alaskan North Slope hydrocarbon reservoirs

scientific article

Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase

scientific article published on 29 February 2008

The influence of in situ chemical oxidation on microbial community composition in groundwater contaminated with chlorinated solvents

scientific article

The response of marine picoplankton to ocean acidification

scientific article

Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195.

scientific article

Truffle brûlés have an impact on the diversity of soil bacterial communities

scientific article

Urban aerosols harbor diverse and dynamic bacterial populations

scholarly article

Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences

scientific article published on June 2002

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

scientific article

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