List of works - Eoin L. Brodie

16S rRNA gene microarray analysis of microbial communities in ethanol-stimulated subsurface sediment

scientific article

A comparison of lodgepole and spruce needle chemistry impacts on terrestrial biogeochemical processes during isolated decomposition

scientific article published on 16 July 2020

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

scientific article

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

scientific article

A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota

scientific article published in 2023

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

scientific article published in September 2006

Avian incubation inhibits growth and diversification of bacterial assemblages on eggs

scientific article

Bacterial Community Dynamics across a Floristic Gradient in a Temperate Upland Grassland Ecosystem

article

Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia

article

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

scientific article

Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland

scientific article

Biogeography of bacterioplankton in the tropical seawaters of Singapore

scientific article published on 15 January 2013

Cellulolytic potential under environmental changes in microbial communities from grassland litter

scientific article

Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil

scientific article

Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators

scientific article

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass

scientific article

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

scientific article

Comparative analyses of the bacterial microbiota of the human nostril and oropharynx.

scientific article

Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains

scientific article published on 21 March 2008

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

scientific article

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

scientific article

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

scientific article

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries

scientific article

Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota

scientific article

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

scientific article published on 25 September 2019

Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

scientific article

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.

scientific article

Developmental microbial ecology of the crop of the folivorous hoatzin

scientific article published on 4 February 2010

Differences in crop bacterial community structure between hoatzins from different geographical locations.

scientific article

Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance

scientific article

Direct cellular lysis/protein extraction protocol for soil metaproteomics

scientific article published on 15 November 2010

Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products

scientific article published on 13 August 2014

Diversity of 16S rRNA genes within individual prokaryotic genomes.

scientific article

Drought and plant litter chemistry alter microbial gene expression and metabolite production

scientific article published on 22 May 2020

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

scientific article

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

scientific article published on 19 March 2018

Effect of elevation, season and accelerated snowmelt on biogeochemical processes during isolated conifer needle litter decomposition

scientific article published in 2021

Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment

scientific article published in October 2008

Environmental genomics reveals a single-species ecosystem deep within Earth

scientific article

Environmental microarray analyses of Antarctic soil microbial communities

scientific article

Environmental whole-genome amplification to access microbial populations in contaminated sediments

scientific article published in May 2006

Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater.

scientific article published in June 2010

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

scientific article (publication date: July 2006)

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle

scientific article published on 11 March 2019

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

scientific article

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use.

scientific article

Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial

scientific article published on 04 November 2020

Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms

article

In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound

scientific article published in November 2008

Induction of intestinal Th17 cells by segmented filamentous bacteria

scientific article (publication date: 30 October 2009)

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

scientific article

Influence of root cortical aerenchyma on the rhizosphere microbiome of field-grown maize

Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs).

scientific article

Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment

scientific article

Interactions between Bacillus anthracis and plants may promote anthrax transmission

scientific article

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

scientific article

Long-term sustainability of a high-energy, low-diversity crustal biome

scientific article

Macroscopic biofilms in fracture-dominated sediment that anaerobically oxidize methane

scientific article

Measurement of Volatile Compounds for Real-Time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt

scientific article published on 23 June 2021

Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling

scientific article published on 14 October 2010

Metagenomic analysis of a stable trichloroethene-degrading microbial community.

scientific article

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

scientific article published on 15 November 2017

Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes

scientific article

Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater

scientific article published on 27 August 2011

Microbial secondary succession in a chronosequence of chalk grasslands

scientific article

Molecular bacterial community analysis of clean rooms where spacecraft are assembled

scientific article

Multiple lineages of Streptomyces produce antimicrobials within passalid beetle galleries across eastern North America

scientific article published in 2021

Niche differentiation is spatially and temporally regulated in the rhizosphere

scientific article published on 17 January 2020

PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip

scientific article

Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer

scientific article published on 17 July 2019

Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site

scientific article

Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad.

scientific article published on October 2010

Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase.

scientific article

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop

scientific article

Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups ⬇️

scientific article published on June 19, 2012

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa

scientific article published on 23 February 2010

Reoxidation of bioreduced uranium under reducing conditions

scientific article published in August 2005

Role and regulation of sigma S in general resistance conferred by low-shear simulated microgravity in Escherichia coli.

scientific article published on December 2004

Routes and rates of bacterial dispersal impact surface soil microbiome composition and functioning

scientific article published in 2022

Seasonal influences on fungal community structure in unimproved and improved upland grassland soils

scientific article published in July 2006

Selective progressive response of soil microbial community to wild oat roots

scientific article

Shifts in the phylogenetic structure and functional capacity of soil microbial communities follow alteration of native tussock grassland ecosystems

scholarly article by Steven A. Wakelin et al published February 2013 in Soil Biology and Biochemistry

Simrank: Rapid and sensitive general-purpose k-mer search tool

scientific article

Soil fungal community structure in a temperate upland grassland soil.

scientific article published in July 2003

Spectroscopic analysis reveals that soil phosphorus availability and plant allocation strategies impact feedstock quality of nutrient-limited switchgrass

scientific article published on 11 March 2022

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

scientific article published on 4 August 2015

Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil

scientific article published on 12 March 2020

Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase

scientific article published on 29 February 2008

The East River, Colorado, Watershed: A Mountainous Community Testbed for Improving Predictive Understanding of Multiscale Hydrological-Biogeochemical Dynamics

article published in 2018

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

scientific article published on 24 October 2016

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Trait-based representation of biological nitrification: model development, testing, and predicted community composition

scientific article

Uranium reduction in sediments under diffusion-limited transport of organic carbon.

scientific article published in September 2005

Urban aerosols harbor diverse and dynamic bacterial populations

scholarly article

Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens

scientific article

Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus

scientific article

List of works by Eoin L. Brodie

16S rRNA gene microarray analysis of microbial communities in ethanol-stimulated subsurface sediment

A comparison of lodgepole and spruce needle chemistry impacts on terrestrial biogeochemical processes during isolated decomposition

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation

Avian incubation inhibits growth and diversification of bacterial assemblages on eggs

Bacterial Community Dynamics across a Floristic Gradient in a Temperate Upland Grassland Ecosystem

Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

Bacterial diversity of terrestrial crystalline volcanic rocks, Iceland

Biogeography of bacterioplankton in the tropical seawaters of Singapore

Cellulolytic potential under environmental changes in microbial communities from grassland litter

Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil

Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass

Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

Comparative analyses of the bacterial microbiota of the human nostril and oropharynx.

Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries

Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change

Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.

Developmental microbial ecology of the crop of the folivorous hoatzin

Differences in crop bacterial community structure between hoatzins from different geographical locations.

Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance

Direct cellular lysis/protein extraction protocol for soil metaproteomics

Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products

Diversity of 16S rRNA genes within individual prokaryotic genomes.

Drought and plant litter chemistry alter microbial gene expression and metabolite production

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.

Effect of elevation, season and accelerated snowmelt on biogeochemical processes during isolated conifer needle litter decomposition

Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment

Environmental genomics reveals a single-species ecosystem deep within Earth

Environmental microarray analyses of Antarctic soil microbial communities

Environmental whole-genome amplification to access microbial populations in contaminated sediments

Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater.

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use.

Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial

Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms

In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound

Induction of intestinal Th17 cells by segmented filamentous bacteria

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

Influence of root cortical aerenchyma on the rhizosphere microbiome of field-grown maize

Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs).

Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment

Interactions between Bacillus anthracis and plants may promote anthrax transmission

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

Long-term sustainability of a high-energy, low-diversity crustal biome

Macroscopic biofilms in fracture-dominated sediment that anaerobically oxidize methane

Measurement of Volatile Compounds for Real-Time Analysis of Soil Microbial Metabolic Response to Simulated Snowmelt

Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling

Metagenomic analysis of a stable trichloroethene-degrading microbial community.

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes

Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater

Microbial secondary succession in a chronosequence of chalk grasslands

Molecular bacterial community analysis of clean rooms where spacecraft are assembled

Multiple lineages of Streptomyces produce antimicrobials within passalid beetle galleries across eastern North America

Niche differentiation is spatially and temporally regulated in the rhizosphere

PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip

Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer

Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site

Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad.

Proteomic and targeted qPCR analyses of subsurface microbial communities for presence of methane monooxygenase.

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop

Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups ⬇️

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa

Reoxidation of bioreduced uranium under reducing conditions

Role and regulation of sigma S in general resistance conferred by low-shear simulated microgravity in Escherichia coli.