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List of works by Jonathan Waters

A molecular and morphological review of the asterinid, Patiriella gunnii (Gray) (Echinodermata: Asteroidea) ⬇️

article

A molecular and morphological revision of genera of Asterinidae (Echinodermata: Asteroidea) ⬇️

scholarly article

A morphological and phylogenetic investigation into divergence among sympatric Australian southern bull kelps (Durvillaea potatorum and D. amatheiae sp. nov.).

scientific article

A new longjaw galaxias species (Teleostei: Galaxiidae) from the Kauru River, North Otago, New Zealand

article

A new species ofGalaxias(Teleostei: Galaxiidae) from the Mackenzie Basin, New Zealand

article

A time-calibrated phylogeny of southern hemisphere stoneflies: Testing for Gondwanan origins

scientific article published on 13 November 2015

Across the Southern Alps by river capture? Freshwater fish phylogeography in South Island, New Zealand

article

Algal Parasite Herpodiscus durvillaeae (Phaeophyceae: Sphacelariales) Inferred to have Traversed the Pacific Ocean with its Buoyant Host

scientific article

An empirical test of freshwater vicariance via river capture

scientific article published in May 2007

An integrated ecological, genetic and geological assessment of long-distance dispersal by invertebrates on kelp rafts

scientific article published on 31 December 2018

An overview of Australia's temperate marine phylogeography, with new evidence from high-dispersal gastropods

article

Ancient DNA and morphometric analysis reveal extinction and replacement of New Zealand's unique black swans

article

Ancient DNA of crested penguins: Testing for temporal genetic shifts in the world's most diverse penguin clade

Ancient DNA of crested penguins: Testing for temporal genetic shifts in the world’s most diverse penguin clade

scholarly article by Theresa L. Cole published in February 2019

Ancient DNA reveals that the ‘extinct’ Hunter Island penguin (Tasidyptes hunteri) is not a distinct taxon

scientific article published in 2017

Antarctica’s ecological isolation will be broken by storm-driven dispersal and warming

article

Archival DNA reveals cryptic biodiversity within the Spotted Shag (Phalacrocorax punctatus) from New Zealand

scholarly article

Asymmetric dispersal of southern bull-kelp (Durvillaea antarctica) adults in coastal New Zealand: testing an oceanographic hypothesis

scientific article published on 28 September 2010

Australia's marine biogeography revisited: Back to the future?

article

Biogeography of a southern hemisphere freshwater fish: how important is marine dispersal?

scientific article published on 01 November 2000

Biogeography off the tracks

scientific article

Biological evidence constraining river drainage evolution across a subduction-transcurrent plate boundary transition, New Zealand

scientific article

CLADOGENESIS AND LOSS OF THE MARINE LIFE-HISTORY PHASE IN FRESHWATER GALAXIID FISHES (OSMERIFORMES: GALAXIIDAE)

scientific article published on 9 May 2007

Can novel genetic analyses help to identify low-dispersal marine invasive species? ⬇️

scientific article

Circumpolar dispersal by rafting in two subantarctic kelp-dwelling crustaceans

scholarly article

Cladogenesis and loss of the marine life-history phase in freshwater galaxiid fishes (Osmeriformes: Galaxiidae).

scientific article published in March 2001

Cladogenesis in a starfish species complex from southern Australia: evidence for vicariant speciation?

scientific article published in July 2004

Clonal diversity of the marine trematode Maritrema novaezealandensis within intermediate hosts: the molecular ecology of parasite life cycles

scientific article published in January 2007

Coalescent Modelling Suggests Recent Secondary-Contact of Cryptic Penguin Species

scientific article

Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes

scientific article published on 06 September 2019

Comparison of population-genetic structuring in congeneric kelp- versus rock-associated snails: a test of a dispersal-by-rafting hypothesis

scientific article published on October 2011

Competitive exclusion: phylogeography’s ‘elephant in the room’? ⬇️

scientific article published on September 27, 2011

Conservation status of New Zealand freshwater fish, 2009

article

Conservation status of New Zealand freshwater fishes, 2017 ⬇️

scientific article published in 2017

Contemporary habitat discontinuity and historic glacial ice drive genetic divergence in Chilean kelp

scientific article

Correction to: Reduced olfactory acuity in recently flightless insects suggests rapid regressive evolution

scientific article published in 2022

Crossing the front: contrasting storm-forced dispersal dynamics revealed by biological, geological and genetic analysis of beach-cast kelp.

scientific article published in March 2018

Cyclone-driven marine rafting: storms drive rapid dispersal of buoyant kelp rafts

scholarly article

DNA samples from wild animal populations as a byproduct of PIT tagging

scientific article published in April 2015

Description of a new species of Patiriella from New Zealand, and review of Patiriella regularis (Echinodermata, Asteroidea) based on morphological and molecular data

scientific article published in December 2002

Development and characterisation of 20 novel microsatellite markers for the little blue penguin (Eudyptula minor) using next-generation sequencing

article

Did interaction between human pressure and Little Ice Age drive biological turnover in New Zealand?

article

Diversity of trematode genetic clones within amphipods and the timing of same-clone infections

scientific article published on 8 December 2006

Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies

scientific article published on 15 September 2009

Does assortative mating contribute to reproductive isolation among sympatric ecotypes of the wing‐dimorphic stonefly Zelandoperla fenestrata (Plecoptera: Gripopterygidae)?

scientific article published on 13 June 2021

Does coastal topography constrain marine biogeography at an oceanographic interface?

scholarly article by Jonathan M. Waters et al published 2014 in Marine and Freshwater Research

Does fish ecology predict dispersal across a river drainage divide?

scientific article

Does migration promote or inhibit diversification? A case study involving the dominant radiation of temperate Southern Hemisphere freshwater fishes

scientific article published on 23 July 2020

Does wing reduction influence the relationship between altitude and insect body size? A case study using New Zealand's diverse stonefly fauna.

scientific article

Does wing size shape insect biogeography? Evidence from a diverse regional stonefly assemblage

article

Driven by the West Wind Drift? A synthesis of southern temperate marine biogeography, with new directions for dispersalism

scholarly article by Jonathan M. Waters published March 2008 in Journal of Biogeography

Durvillaea poha sp. nov. (Fucales, Phaeophyceae): a buoyant southern bull-kelp species endemic to New Zealand

article

Ebony underpins Batesian mimicry in an insect melanic polymorphism

scientific article published on 16 June 2022

Ecological gradients drive insect wing loss and speciation: The role of the alpine treeline

scientific article published on 25 May 2019

Evaluating Genetic Diversity Associated with Propagation-Assisted Restoration of American Shad

scholarly article

Evolution and biogeography of New Zealand's longjaw galaxiids (Osmeriformes: Galaxiidae): the genetic effects of glaciation and mountain building

article

Evolution of biological dispersal corridors through a tectonically active mountain range in New Zealand

article

Evolution of the Taieri River catchment, East Otago, New Zealand

article

Evolutionary consequences of microhabitat: population-genetic structuring in kelp- vs. rock-associated chitons

scientific article published on 26 October 2011

Extinction and recolonization of coastal megafauna following human arrival in New Zealand

scientific article (publication date: 7 July 2014)

Extreme intraspecific mitochondrial DNA sequence divergence in Galaxias maculatus (Osteichthys: Galaxiidae), one of the world's most widespread freshwater fish

scientific article published in February 1999

Fine-scale habitat preferences influence within-river population connectivity: a case-study using two sympatric New ZealandGalaxiasfish species

article

Founder takes all: density-dependent processes structure biodiversity

scientific article

GENES MEET GEOLOGY: FISH PHYLOGEOGRAPHIC PATTERN REFLECTS ANCIENT, RATHER THAN MODERN, DRAINAGE CONNECTIONS

article

GENETIC AND MORPHOLOGICAL ANALYSES OF THE SOUTHERN BULL KELP DURVILLAEA ANTARCTICA (PHAEOPHYCEAE: DURVILLAEALES) IN NEW ZEALAND REVEAL CRYPTIC SPECIES(1).

scientific article

GENETIC STRUCTURING OF RELICT POPULATIONS OF GAPPER'S RED-BACKED VOLE (CLETHRIONOMYS GAPPERI)

scientific article published in 2001

Gene Trees versus Species Trees: Reassessing Life-History Evolution in a Freshwater Fish Radiation

article

Genes meet geology: fish phylogeographic pattern reflects ancient, rather than modern, drainage connections

scientific article (publication date: September 2001)

Genetic affinities between trans-oceanic populations of non-buoyant macroalgae in the high latitudes of the Southern Hemisphere

scientific article published on 22 July 2013

Genetic ages for Quaternary topographic evolution: A new dating tool

scholarly article

Genetic analyses of rafted macroalgae reveal regional oceanographic connectivity patterns

Genetic and morphological evidence for reproductive isolation between sympatric populations of Galaxias (Teleostei: Galaxiidae) in South Island, New Zealand

article

Genetic and morphological evidence for reproductive isolation between sympatric populations of Galaxias (Teleostei: Galaxiidae) in South Island, New Zealand

scientific article published on 14 January 2008

Genetic and morphological evidence for two species ofLeucocarboshag (Aves, Pelecaniformes, Phalacrocoracidae) from southern South Island of New Zealand

article

Genetic diversity in New Zealand Galaxias vulgaris sensu lato (Teleostei: Osmeriformes: Galaxiidae): a test of a biogeographic hypothesis

scientific article (publication date: 7 July 2008)

Genetic impacts of physical disturbance processes in coastal marine ecosystems

scientific article published in 2022

Genome-wide SNPs reveal fine-scale differentiation among wingless alpine stonefly populations and introgression between winged and wingless forms

scientific article published on 28 November 2015

Genomic signatures of parallel alpine adaptation in recently‐evolved flightless insects

scientific article

Genomics Reveals Exceptional Phylogenetic Diversity Within a Narrow-Range Flightless Insect ⬇️

scientific article published in March 2022

Genomics Reveals Widespread Ecological Speciation in Flightless Insects

scientific article published on 21 December 2020

Genomics detects population structure within and between ocean basins in a circumpolar seabird: The white-chinned petrel

scientific article published on 21 October 2019

Genotyping-by-sequencing supports a genetic basis for wing reduction in an alpine New Zealand stonefly

scientific article published in Scientific Reports

Geographically contrasting biodiversity reductions in a widespread New Zealand seabird.

scientific article published on 30 July 2015

Geological and biological evidence for regional drainage reversal during lateral tectonic transport, Marlborough, New Zealand

article

Geological controls on palaeo-environmental change in a tectonic rain shadow, southern New Zealand

article

Geological dates and molecular rates: fish DNA sheds light on time dependency

scientific article published on 14 February 2008

Geological dates and molecular rates: rapid divergence of rivers and their biotas

scientific article

Geological subsidence, river capture, and cladogenesis of galaxiid fish lineages in central New Zealand

article

Geology shapes biogeography: Quaternary river-capture explains New Zealand's biologically ‘composite’ Taieri River

article

Glacial oceanographic contrasts explain phylogeography of Australian bull kelp

scientific article published on 23 April 2009

Global phylogeography of the fissiparous sea-star genus Coscinasterias ⬇️

scientific article published in January 2003

Goodbye Gondwana? New Zealand Biogeography, Geology, and the Problem of Circularity

article

Homing behaviour facilitates subtle genetic differentiation among river populations of Alosa sapidissima: microsatellites and mtDNA

scientific article published in 2000

How disturbance and dispersal influence intraspecific structure

scientific article published in 2017

Human-mediated extirpation of the unique Chatham Islands sea lion and implications for the conservation management of remaining New Zealand sea lion populations.

scientific article

Hydroelectric development and translocation of Galaxias brevipinnis: a cloud at the end of the tunnel?

article

Insect wing loss is tightly linked to the treeline: evidence from a diverse stonefly assemblage

scholarly article

Intraspecific phylogeography of the Cape galaxias from South Africa: evidence from mitochondrial DNA sequences

article

Invader or resident? Ancient-DNA reveals rapid species turnover in New Zealand little penguins ⬇️

scientific article published in February 2016

Isolation and characterization of microsatellite loci from the endangered New Zealand takahe (Gruiformes; Rallidae;Porphyrio hochstetteri)

article

Isolation and characterization of microsatellite loci from the yellow-eyed penguin (Megadyptes antipodes).

scientific article

Kelp genes reveal effects of subantarctic sea ice during the Last Glacial Maximum

scholarly article

Lake and species specific patterns of non-diadromous recruitment in amphidromous fish: the importance of local recruitment and habitat requirements

scientific article published in 2017

Late Holocene uplift of a coastal terrace near the Akatore Fault, southern New Zealand

scientific article published on 11 October 2020

Late Quaternary river drainage and fish evolution, Southland, New Zealand

article

Life history plasticity affects the population structure and distribution of the widespread migratory fish Galaxias brevipinnis

scientific article published on 20 October 2020

Long-distance dispersal: a framework for hypothesis testing.

scientific article

Lost in translation or deliberate falsification? Genetic analyses reveal erroneous museum data for historic penguin specimens

scientific article (publication date: 7 April 2010)

Managing shifting species: Ancient DNA reveals conservation conundrums in a dynamic world

scientific article

Marine biogeographic disjunction in central New Zealand

article

Marine biogeographical disjunction in temperate Australia: historical landbridge, contemporary currents, or both?

article

Marine biogeographical structure in two highly dispersive gastropods: implications for trans-Tasman dispersal

scholarly article by Jonathan M. Waters et al published April 2007 in Journal of Biogeography

Marine biogeography of southern Australia: phylogeographical structure in a temperate sea-star

article

Marine dispersal as a pre-requisite for Gondwanan vicariance among elements of the galaxiid fish fauna

article

Microsatellite loci for the New Zealand trematode Maritrema novaezealandensis

article

Microsatellite loci for the progenetic trematode,Coitocaecum parvum(Opecoelidae)

article

Mitochondrial DNA phylogenetics of the Galaxias vulgaris complex from South Island, New Zealand: rapid radiation of a species flock

article

Mitogenomes uncover extinct penguin taxa and reveal island formation as a key driver of speciation ⬇️

scientific article published on 01 April 2019

Molecular phylogenetics and biogeography of galaxiid fishes (Osteichthyes: Galaxiidae): dispersal, vicariance, and the position of Lepidogalaxias salamandroides

scientific article

Molecular systematics of some Indo-Pacific asterinids (Echinodermata, Asteroidea): does taxonomy reflect phylogeny?

scientific article published in March 2004

More than the eye can see: Genomic insights into the drivers of genetic differentiation in Royal/Macaroni penguins across the Southern Ocean

scientific article published on 16 July 2019

Morphological and ancient DNA analyses reveal inaccurate labels on two of Buller's bird specimens

scholarly article

Multigene phylogeny of the southern bull-kelp genus Durvillaea (Phaeophyceae: Fucales) ⬇️

scientific article published on October 28, 2010

Multilocus assignment analyses reveal multiple units and rare migration events in the recently expanded yellow-eyed penguin (Megadyptes antipodes)

scientific article published on 24 April 2009

Multivariate skeletal analyses support a taxonomic distinction between New Zealand and Australian Eudyptula penguins (Sphenisciformes: Spheniscidae)

article

Myth or relict: Does ancient DNA detect the enigmatic Upland seal?

scientific article published on 5 January 2016

Native or not? Ancient DNA rejects persistence of New Zealand's endemic black swan: A reply to Montano et al

article

Neither historical climate nor contemporary range fully explain the extant patterns of molecular diversity in marine species

scientific article published in 2021

Niche partitioning and the effect of interspecific competition on microhabitat use by two sympatric galaxiid stream fishes

article

Northward range extension for Durvillaea poha bull kelp: Response to tectonic disturbance?

scientific article published on 26 May 2021

Oceanic rafting by a coastal community

scientific article published on 15 September 2010

Oceanography promotes self-recruitment in a planktonic larval disperser

scientific article

On-shelf larval retention limits population connectivity in a coastal broadcast spawner

scientific article published in 2015

Onset of glaciation drove simultaneous vicariant isolation of Alpine insects in New Zealand

scientific article

Out of Africa: the slow train to australasia

scientific article

Passive rafting is a powerful driver of transoceanic gene flow

scientific article published on 7 November 2012

Phylogenetic divergence of island biotas: Molecular dates, extinction, and "relict" lineages

scientific article published on 23 September 2019

Phylogenetic placement of retropinnid fishes: data set incongruence can be reduced by using asymmetric character state transformation costs

scientific article

Phylogenetic relationships in a small group of diminutive galaxiid fishes and the evolution of sexual dimorphism

scientific article published in March 2004

Phylogenetics of the australasian mudfishes: evolution of an eel-like body plan

scientific article

Phylogeographical disjunction in abundant high-dispersal littoral gastropods

scientific article

Phylogeography of a high-dispersal New Zealand sea-star: does upwelling block gene-flow?

scientific article published on September 2004

Phylogeography reveals a North Island range extension for New Zealand's only sexually wing-dimorphic stonefly (Stenoperla helsoni)

article

Plio-Pleistocene environmental changes shape present day phylogeography of New Zealand’s southern beeches (Nothofagaceae)

2020 scientific paper

Poleward bound: biological impacts of Southern Hemisphere glaciation

scientific article

Pre-human New Zealand sea lion (Phocarctos hookeri) rookeries on mainland New Zealand

article

Priority effects can lead to underestimation of dispersal and invasion potential

scholarly article by Ceridwen I. Fraser et al published 28 May 2014 in Biological Invasions

RIVER CAPTURE, RANGE EXPANSION, AND CLADOGENESIS: THE GENETIC SIGNATURE OF FRESHWATER VICARIANCE

scientific article published on 01 May 2006

RIVER CAPTURE, RANGE EXPANSION, AND CLADOGENESIS: THE GENETIC SIGNATURE OF FRESHWATER VICARIANCE

scholarly article

Radiocarbon-dating and ancient DNA reveal rapid replacement of extinct prehistoric penguins

scholarly article

Rafting dispersal constrained by an oceanographic boundary

article by CJ Garden et al published 31 March 2014 in Marine Ecology Progress Series

Rafting dispersal in a brooding southern sea star (Asteroidea : Anasterias)

scientific article published in 2018

Rafting rocks reveal marine biological dispersal: A case study using clasts from beach-cast macroalgal holdfasts

article

Rapid biological speciation driven by tectonic evolution in New Zealand

article

Rapid radiation of Southern Ocean shags in response to receding sea ice

scientific article published in 2022

Receding ice drove parallel expansions in Southern Ocean penguins

scientific article published on 16 December 2019

Reduced olfactory acuity in recently flightless insects suggests rapid regressive evolution

scientific article published in 2022

Relict or colonizer? Extinction and range expansion of penguins in southern New Zealand

scientific article

Repeated Alpine Flight Loss Within the Widespread New Zealand Stonefly Nesoperla fulvescens Hare (Plecoptera: Gripopterygidae) ⬇️

scientific article published in November 2022

Reply to Chisholm (2011), Conservation status of New Zealand freshwater fish, 2009; Allibone et al.(2010)

article

SNP analyses reveal a diverse pool of potential colonists to earthquake-uplifted coastlines

scientific article published on 04 December 2019

Shared patterns of species turnover between seaweeds and seed plants break down at increasing distances from the sea

scientific article published on 05 December 2013

Southern Hemisphere Coastal Ecosystems are Biologically Connected by Frequent, Long-Distance Rafting Events

scientific article published on 21 December 2021

Speciation, range contraction and extinction in the endemic New Zealand King Shag complex

scientific article

Strong phylogeographic structure in a sedentary seabird, the Stewart Island Shag (Leucocarbo chalconotus)

scientific article (publication date: 2014)

Swimming against the current: genetic structure, host mobility and the drift paradox in trematode parasites ⬇️

scientific article published on November 25, 2011

Systematics and phylogeny of a new cryptic species of Diloma Philippi (Mollusca: Gastropoda: Trochidae) from a novel habitat, the bull kelp holdfast communities of southern New Zealand

scientific article (publication date: 2009)

Taxonomy and nomenclature of black nerites (Gastropoda�:�Neritimorpha�:�Nerita) from the South Pacific

Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation

scientific article

Temporal genetic samples indicate small effective population size of the endangered yellow-eyed penguin

article

The footprint of continental-scale ocean currents on the biogeography of seaweeds

scientific article

The founder space race: a reply to Buckley et al.

scientific article published on 8 February 2013

The genomic footprint of coastal earthquake uplift

scientific article published on 08 July 2020

The importance of replicating genomic analyses to verify phylogenetic signal for recently evolved lineages

scientific article published on 30 May 2016

The imprecision of heterozygosity-fitness correlations hinders the detection of inbreeding and inbreeding depression in a threatened species

scientific article published on 19 November 2010

The lasting biological signature of Pliocene tectonics: Reviewing the re‐routing of Australia's largest river drainage system

scholarly article

The linking of plate tectonics and evolutionary divergence.

scientific article

The significance of past interdrainage connectivity for studies of diversity, distribution and movement of freshwater-limited taxa within a catchment

scholarly article

Trans-Tasman genetic connectivity in the intertidal air-breathing slug Onchidella nigricans

scientific article published in 2016

Transoceanic dispersal and cryptic diversity in a cosmopolitan rafting nudibranch

article

Transoceanic genetic similarities of kelp-associated sea slug populations: long-distance dispersal via rafting?

scholarly article

Transverse Alpine Speciation Driven by Glaciation

scientific article

Within-river genetic connectivity patterns reflect contrasting geomorphology

article

Zelandoperla maungatuaensis sp. n. (Plecoptera: Gripopterygidae), a new flightless stonefly species from Otago, New Zealand

scholarly article published in 2019

ebony underpins Batesian mimicry in melanic stoneflies

scientific article published on 28 July 2023

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