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List of works by Francisco J Ruiz-Dueñas

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

scientific article
Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this

scientific article published on January 13, 2009
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

scientific article published on 20 March 2012
Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways.

scientific article
Substrate oxidation sites in versatile peroxidase and other basidiomycete peroxidases.

scientific article
Molecular characterization of a novel peroxidase isolated from the ligninolytic fungus Pleurotus eryngii.

scientific article
A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta.

scientific article
Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes

scientific article published on 6 August 2013
A tryptophan neutral radical in the oxidized state of versatile peroxidase from Pleurotus eryngii: a combined multifrequency EPR and density functional theory study.

scientific article published on 27 January 2006
Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability

scientific article
Novel structural features in the GMC family of oxidoreductases revealed by the crystal structure of fungal aryl-alcohol oxidase

scientific article
Copper trafficking: the solution structure of Bacillus subtilis CopZ

scientific article
Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood

scientific article
Solution structure of the N-terminal domain of a potential copper-translocating P-type ATPase from Bacillus subtilis in the apo and Cu(I) loaded states

scientific article
Pleurotus ostreatus heme peroxidases: an in silico analysis from the genome sequence to the enzyme molecular structure

scientific article
Lignin-degrading peroxidases from genome of selective ligninolytic fungus Ceriporiopsis subvermispora.

scientific article
Two Oxidation Sites for Low Redox Potential Substrates: A DIRECTED MUTAGENESIS, KINETIC, AND CRYSTALLOGRAPHIC STUDY ON PLEUROTUS ERYNGII VERSATILE PEROXIDASE

scientific article
Directed evolution of a temperature-, peroxide- and alkaline pH-tolerant versatile peroxidase

scientific article published on 01 January 2012
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

scientific article
Ligninolytic peroxidase gene expression by Pleurotus ostreatus : Differential regulation in lignocellulose medium and effect of temperature and pH

article
Site-directed mutagenesis of the catalytic tryptophan environment in Pleurotus eryngii versatile peroxidase

scientific article
In vitro activation, purification, and characterization of Escherichia coli expressed aryl-alcohol oxidase, a unique H2O2-producing enzyme.

scientific article published in July 2005
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus

scientific article
Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study.

scientific article published on March 2015
Manganese Oxidation Site inPleurotus eryngiiVersatile Peroxidase: A Site-Directed Mutagenesis, Kinetic, and Crystallographic Study†,‡

scientific article published on 01 January 2007
Description of the first fungal dye-decolorizing peroxidase oxidizing manganese(II)

scientific article
Crystallographic, Kinetic, and Spectroscopic Study of the First Ligninolytic Peroxidase Presenting a Catalytic Tyrosine

scientific article published on March 2, 2011
Basidiomycete DyPs: Genomic diversity, structural-functional aspects, reaction mechanism and environmental significance

scientific article
Escherichia coli expression and in vitro activation of a unique ligninolytic peroxidase that has a catalytic tyrosine residue

scientific article
Demonstration of Lignin-to-Peroxidase Direct Electron Transfer: A TRANSIENT-STATE KINETICS, DIRECTED MUTAGENESIS, EPR, AND NMR STUDY

scientific article
Isolation of two laccase genes from the white-rot fungus Pleurotus eryngii and heterologous expression of the pel3 encoded protein

article
Engineering a fungal peroxidase that degrades lignin at very acidic pH.

scientific article published on 24 July 2014
NMR study of manganese(II) binding by a new versatile peroxidase from the white-rot fungus Pleurotus eryngii.

scientific article
Heterologous expression and physicochemical characterization of a fungal dye-decolorizing peroxidase from Auricularia auricula-judae

scientific article published on 18 August 2014
Effect of culture temperature on the heterologous expression of Pleurotus eryngii versatile peroxidase in Aspergillus hosts.

scientific article
Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi

scientific article
Experimental recreation of the evolution of lignin-degrading enzymes from the Jurassic to date

scientific article published on 16 March 2017
Site-directed mutagenesis of selected residues at the active site of aryl-alcohol oxidase, an H2O2-producing ligninolytic enzyme

scientific article published on 25 September 2006
Evolutionary convergence in lignin-degrading enzymes.

scientific article
Role of surface tryptophan for peroxidase oxidation of nonphenolic lignin

scientific article
EPR parameters of amino acid radicals in P. eryngii versatile peroxidase and its W164Y variant computed at the QM/MM level

article published in 2011
Effect of pH on the stability of Pleurotus eryngii versatile peroxidase during heterologous production in Emericella nidulans

scientific article published on 6 August 2004
Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase

scientific article published on 23 October 2015
Mapping the Long-Range Electron Transfer Route in Ligninolytic Peroxidases

scientific article published on 4 April 2017
Improving the oxidative stability of a high redox potential fungal peroxidase by rational design

scientific article
Wood and humus decay strategies by white-rot basidiomycetes correlate with two different dye decolorization and enzyme secretion patterns on agar plates

scientific article published on 12 April 2014
Delignification of eucalypt kraft pulp with manganese-substituted polyoxometalate assisted by fungal versatile peroxidase

scientific article published on March 16, 2010
Formation of a tyrosine adduct involved in lignin degradation by Trametopsis cervina lignin peroxidase: a novel peroxidase activation mechanism.

scientific article published in June 2013
Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants

scientific article published on 19 August 2019
Unveiling the basis of alkaline stability of an evolved versatile peroxidase

scientific article

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