List of works - Finn Drabløs

A Balanced Tissue Composition Reveals New Metabolic and Gene Expression Markers in Prostate Cancer

scientific article

A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites

scientific article

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

scientific article published on 26 November 2010

A methodology for motif discovery employing iterated cluster re-assignment

scientific article published on 01 January 2006

A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine

scientific article

A novel non-canonical Wnt signature for prostate cancer aggressiveness

scientific article published on 24 December 2016

A promoter-level mammalian expression atlas

scientific article

A property-based analysis of human transcription factors

scientific article

A survey of motif discovery methods in an integrated framework

scientific article

Alkylation damage in DNA and RNA--repair mechanisms and medical significance

scientific article published in November 2004

Assessment of composite motif discovery methods

scientific article

Bioinformatic mapping of AlkB homology domains in viruses

scientific article

Cell cycle regulation of human DNA repair and chromatin remodeling genes

scientific article

Cell-type specificity of ChIP-predicted transcription factor binding sites

scientific article

Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized.

scientific article

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

scientific article

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements

scientific article

Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing

scientific article published in 2018

Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway

scientific article

Compo: composite motif discovery using discrete models

scientific article published on 08 December 2008

Detecting periodic patterns in biological sequences

scientific article published in January 1998

Directed evolution of the transcription factor XylS for development of improved expression systems ⬇️

scientific article published on June 3, 2009

Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization.

scientific article

Enhanced identification of significant regulators of gene expression

scientific article published on 06 April 2020

EpiFactors: a comprehensive database of human epigenetic factors and complexes

scientific article

Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

scientific article

FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks

scientific article published on 17 March 2021

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

scientific article published on 27 April 2017

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Gene duplications in prokaryotes can be associated with environmental adaptation

scientific article

Gene regulation in the immediate-early response process

scientific article

Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer

scientific article

Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains

scientific article published on 14 May 2015

High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface

scientific article published on 14 September 2011

Homology-based modelling of targets for rational drug design

scientific article published in September 2004

Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage

scientific article

Identification of a novel, widespread, and functionally important PCNA-binding motif

scientific article

Identification of conserved residues in family of esterase and lipase sequences.

scientific article published on January 1997

Identification of important motifs in protein sequences: program MULTIM and its applications to lipase-related sequences

scientific article published on 01 January 1997

Improved benchmarks for computational motif discovery

scientific article

Isolation of mutant alginate lyases with cleavage specificity for di-guluronic acid linkages.

scientific article

LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium

scientific article published on 11 September 2020

Lipases and esterases: a review of their sequences, structure and evolution.

scientific article published on January 1995

Measures of co-expression for improved function prediction of long non-coding RNAs

scholarly article by Rezvan Ehsani published in December 2018

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis

scientific article

Norwegian e-Infrastructure for Life Sciences (NeLS)

Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α

scientific article

PriorsEditor: a tool for the creation and use of positional priors in motif discovery.

scientific article

Protein Alpha Shape (PAS) Dock: a new gaussian-based score function suitable for docking in homology modelled protein structures

scientific article published in March 2006

Protein Alpha Shape Similarity Analysis (PASSA): a new method for mapping protein binding sites. Application in the design of a selective inhibitor of tyrosine kinase 2.

scientific article

Recommendations for the FAIRification of genomic track metadata

scientific article published in 2021

Relationship between operon preference and functional properties of persistent genes in bacterial genomes

scientific article

Robust Distance Measures for kNN Classification of Cancer Data

scientific article published on 13 October 2020

SFRP4 gene expression is increased in aggressive prostate cancer

scientific article published on 27 October 2017

Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits

scientific article

Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model.

scientific article

Surface and electrostatics of cutinases

scientific article published on 01 January 1997

Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer

scientific article published on 07 July 2020

The Genomic HyperBrowser: an analysis web server for genome-scale data

scientific article

The Pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates.

scientific article

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

scientific article

The differential disease regulome

scientific article

The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences

scientific article (publication date: 2014)

The major histocompatibility class I locus in Atlantic salmon (Salmo salar L.): polymorphism, linkage analysis and protein modelling.

scientific article published on 2 October 2002

The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities

scientific article

The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.

scientific article published on 31 May 2018

TopoICSim: a new semantic similarity measure based on gene ontology.

scientific article

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication

scientific article published on 15 January 2013

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

scientific article published on 27 October 2016

Uracil in DNA--occurrence, consequences and repair

scientific article

Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome.

scientific article published on 14 February 2017

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease

scientific article

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes

scientific article published on 24 July 2015

List of works by Finn Drabløs

A Balanced Tissue Composition Reveals New Metabolic and Gene Expression Markers in Prostate Cancer

A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

A methodology for motif discovery employing iterated cluster re-assignment

A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine

A novel non-canonical Wnt signature for prostate cancer aggressiveness

A promoter-level mammalian expression atlas

A property-based analysis of human transcription factors

A survey of motif discovery methods in an integrated framework

Alkylation damage in DNA and RNA--repair mechanisms and medical significance

Assessment of composite motif discovery methods

Bioinformatic mapping of AlkB homology domains in viruses

Cell cycle regulation of human DNA repair and chromatin remodeling genes

Cell-type specificity of ChIP-predicted transcription factor binding sites

Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized.

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements

Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing

Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway

Compo: composite motif discovery using discrete models

Detecting periodic patterns in biological sequences

Directed evolution of the transcription factor XylS for development of improved expression systems ⬇️

Enhanced efficacy of bleomycin in bladder cancer cells by photochemical internalization.

Enhanced identification of significant regulators of gene expression

EpiFactors: a comprehensive database of human epigenetic factors and complexes

Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

Gene duplications in prokaryotes can be associated with environmental adaptation

Gene regulation in the immediate-early response process

Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer

Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains

High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface

Homology-based modelling of targets for rational drug design

Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage

Identification of a novel, widespread, and functionally important PCNA-binding motif

Identification of conserved residues in family of esterase and lipase sequences.

Identification of important motifs in protein sequences: program MULTIM and its applications to lipase-related sequences

Improved benchmarks for computational motif discovery

Isolation of mutant alginate lyases with cleavage specificity for di-guluronic acid linkages.

LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium

Lipases and esterases: a review of their sequences, structure and evolution.

Measures of co-expression for improved function prediction of long non-coding RNAs

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis

Norwegian e-Infrastructure for Life Sciences (NeLS)

Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α

PriorsEditor: a tool for the creation and use of positional priors in motif discovery.

Protein Alpha Shape (PAS) Dock: a new gaussian-based score function suitable for docking in homology modelled protein structures

Protein Alpha Shape Similarity Analysis (PASSA): a new method for mapping protein binding sites. Application in the design of a selective inhibitor of tyrosine kinase 2.

Recommendations for the FAIRification of genomic track metadata

Relationship between operon preference and functional properties of persistent genes in bacterial genomes

Robust Distance Measures for kNN Classification of Cancer Data

SFRP4 gene expression is increased in aggressive prostate cancer

Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits

Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model.

Surface and electrostatics of cutinases

Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer

The Genomic HyperBrowser: an analysis web server for genome-scale data

The Pseudomonas syringae genome encodes a combined mannuronan C-5-epimerase and O-acetylhydrolase, which strongly enhances the predicted gel-forming properties of alginates.

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

The differential disease regulome

The eGenVar data management system--cataloguing and sharing sensitive data and metadata for the life sciences

The major histocompatibility class I locus in Atlantic salmon (Salmo salar L.): polymorphism, linkage analysis and protein modelling.

The microbial communities in two apparently physically separated deep subsurface oil reservoirs show extensive DNA sequence similarities

The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.

TopoICSim: a new semantic similarity measure based on gene ontology.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Uracil in DNA--occurrence, consequences and repair

Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome.

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes