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List of works by Akhilesh Kumar Tyagi

A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in Chickpea

scientific article

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea.

scientific article published on 11 July 2017

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea

scientific article

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).

scientific article published on 2 May 2013

A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea.

scientific article published on 22 September 2015

A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea

scientific article published on 10 June 2015

A multi-step phosphorelay two-component system impacts on tolerance against dehydration stress in common wheat

scientific article published on 17 September 2014

ABC Transporter-Mediated Transport of Glutathione Conjugates Enhances Seed Yield and Quality in Chickpea

scientific article published on 08 February 2019

An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating Grain Weight in Rice

scientific article published on 26 October 2016

An Integrated Genomic Strategy Delineates Candidate Mediator Genes Regulating Grain Size and Weight in Rice

scientific article published on 22 March 2016

An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).

scientific article

An integrated genomic approach for rapid delineation of candidate genes regulating agro-morphological traits in chickpea

scientific article

An integrated physical and genetic map of the rice genome

scientific article

Analysis of differentially expressed genes in leaf rust infected bread wheat involving seedling resistance gene Lr28

scientific article published on 01 June 2011

Analysis of expression profile of selected genes expressed during auxin-induced somatic embryogenesis in leaf base system of wheat (Triticum aestivum) and their possible interactions

scientific article

Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice ⬇️

scientific article published on July 3, 2011

CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea

scientific article published on 30 March 2019

Characterization and phylogenetic analysis of environmental stress-responsive SAP gene family encoding A20/AN1 zinc finger proteins in tomato.

scientific article published on 8 May 2009

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers ⬇️

scientific article published on December 27, 2012

Comprehensive expression analysis of rice Armadillo gene family during abiotic stress and development

scientific article published on 6 January 2014

Comprehensive genomic analysis and expression profiling of phospholipase C gene family during abiotic stresses and development in rice

scientific article

Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants

scientific article published on 11 December 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article published on 8 January 2007

De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

scientific article

Decoding the rice genome

scientific article published on 01 April 2006

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea

scientific article published on 27 April 2015

Development of SSR markers and construction of a linkage map in jute ⬇️

scientific article published on January 1, 2012

Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane ⬇️

scientific article published on April 13, 2013

Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress

scientific article published on 8 November 2007

EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea

scientific article published on 19 April 2016

Emerging functions of multi-protein complex Mediator with special emphasis on plants

scientific article published on 19 May 2017

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.

scientific article

Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome

scientific article

Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

scientific article

Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica).

scientific article published on 18 July 2007

F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress

scientific article published on 9 February 2007

Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping ⬇️

scientific article published on April 29, 2013

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.

scientific article published on 08 June 2011

Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.

scientific article published on 20 April 2018

Genetic dissection of plant growth habit in chickpea.

scientific article published on 9 June 2017

Genetic dissection of seed-iron and zinc concentrations in chickpea

scientific article published on 11 April 2016

Genome analysis and genetic enhancement of tomato

scientific article

Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea

scientific article published on 23 March 2016

Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development ⬇️

scientific article published on February 3, 2011

Genome-wide analysis of intronless genes in rice and Arabidopsis

scientific article published on 20 June 2007

Genome-wide analysis of polymorphisms identified domestication-associated long low diversity region carrying important rice grain size/weight QTL

scientific article published on 20 May 2020

Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa)

scientific article published on 16 May 2006

Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea

scientific article published on 08 June 2019

Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea.

scientific article

Genome-wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice.

scientific article published on 7 January 2014

Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice.

scientific article published on April 2016

Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea

scientific article published on 24 July 2015

Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis

scientific article published on 04 July 2007

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

scientific article

Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

scientific article

Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.

scientific article

Genome-wide investigation and expression analysis suggest diverse roles of auxin-responsive GH3 genes during development and response to different stimuli in tomato (Solanum lycopersicum) ⬇️

scientific article published on January 8, 2012

Genome-wide survey and expression analysis suggest diverse roles of glutaredoxin gene family members during development and response to various stimuli in rice ⬇️

scientific article published on November 2, 2010

Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice

scientific article

High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea

scientific article

High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).

scientific article

Identification and characterization of high temperature stress responsive genes in bread wheat (Triticum aestivum L.) and their regulation at various stages of development.

scientific article

Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea

scientific article

Identification of candidate genes for dissecting complex branch number trait in chickpea.

scientific article

Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato ⬇️

scientific article published on October 5, 2010

Integrated Genomic Strategies for Cereal Genetic Enhancement: Combining QTL and Association Mapping

scientific article published on 01 January 2020

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress

scientific article

Manually curated database of rice proteins

scientific article

Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution.

scientific article

Mediator subunit OsMED14_1 plays an important role in rice development

scientific article published on 12 December 2019

Microarray analysis reveals overlapping and specific transcriptional responses to different plant hormones in rice ⬇️

scientific article published on July 25, 2012

Molecular analysis of a leprosy immunotherapeutic bacillus provides insights into Mycobacterium evolution

scientific article

Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa).

scientific article

Molecular characterization of a light-responsive gene, breast basic conserved protein 1 (OsiBBC1), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica

scientific article

Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea

scientific article

OsCPK29 interacts with MADS68 to regulate pollen development in rice

scientific article published on 30 April 2022

OsIAA1, an Aux/IAA cDNA from Rice, and Changes in Its Expression as Influenced by Auxin and Light ⬇️

scientific article published on October 31, 2001

OsiSAP1 overexpression improves water-deficit stress tolerance in transgenic rice by affecting expression of endogenous stress-related genes

scientific article published on 26 June 2014

Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants

scientific article published in December 2006

Pollen-Specific Expression of Oryza sativa Indica Pollen Allergen Gene (OSIPA) Promoter in Rice and Arabidopsis Transgenic Systems ⬇️

scientific article published on May 1, 2011

Polyphasic taxonomic analysis establishes Mycobacterium indicus pranii as a distinct species

scientific article

Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development

scientific article

Regional Association Analysis of MetaQTLs Delineates Candidate Grain Size Genes in Rice

scientific article published on 29 May 2017

Rice A20/AN1 zinc‐finger containing stress‐associated proteins (SAP1/11) and a receptor‐like cytoplasmic kinase (OsRLCK253) interact via A20 zinc‐finger and confer abiotic stress tolerance in transgenic Arabidopsis plants ⬇️

scientific article published on April 28, 2011

Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India

scientific article

Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses

scientific article published on 19 July 2016

Rosales sister to Fabales: towards resolving the rosid puzzle

scientific article

SAPs as novel regulators of abiotic stress response in plants ⬇️

scientific article published on 02 May 2013

Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

scientific article published on 14 April 2004

Spatial and temporal activity of upstream regulatory regions of rice anther-specific genes in transgenic rice and Arabidopsis ⬇️

scientific article published on June 9, 2012

Structural and functional analysis of rice genome

scientific article published in April 2004

Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa).

scientific article

The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress ⬇️

scientific article published on October 21, 2011

The Rice Annotation Project Database (RAP-DB): 2008 update

scientific article

The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

scientific article published on January 2005

The auxin-responsive GH3 gene family in rice (Oryza sativa).

scientific article

The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes

scientific article

The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress

scientific article published in September 2008

The water-deficit stress- and red-rot-related genes in sugarcane.

scientific article published on 7 October 2009

ThepsbO Gene for 33-kDa Precursor Polypeptide of the Oxygen-Evolving Complex in Arabidopsis thaliana -- Nucleotide Sequence and Control of its Expression ⬇️

scientific article published on August 31, 1998

Transcription factor OsNF-YB9 regulates reproductive growth and development in rice

scientific article published on 03 September 2019

Transcription factors regulating the progression of monocot and dicot seed development ⬇️

scientific article published on January 13, 2011

Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural traits enhance yield and productivity in chickpea

scientific article published on 19 March 2019

Transcriptome analysis of rin mutant fruit and in silico analysis of promoters of differentially regulated genes provides insight into LeMADS-RIN-regulated ethylene-dependent as well as ethylene-independent aspects of ripening in tomato ⬇️

scientific article published on 03 January 2012

Transcriptome sequencing of wild chickpea as a rich resource for marker development ⬇️

scientific article published on 06 June 2012

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.

scientific article published on 5 May 2015

Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.

scientific article

Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.).

scientific article published on 23 April 2010

Whole Genome Sequence of the Rifamycin B-Producing Strain Amycolatopsis mediterranei S699 ⬇️

scientific article published on October 1, 2011

bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.

scientific article published on 06 March 2017

mQTL-seq delineates functionally relevant candidate gene harbouring a major QTL regulating pod number in chickpea.

scientific article published on 19 December 2015

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