List of works - Robbie P. Joosten

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

scientific article published in 2022

A crystal structure of the human protein kinase Mps1 reveals an ordered conformation of the activation loop

scientific article published on 08 January 2019

A new generation of crystallographic validation tools for the protein data bank

scientific article

A series of PDB related databases for everyday needs

scientific article

A series of PDB-related databanks for everyday needs.

scientific article published on 28 October 2014

AlphaFill: enriching AlphaFold models with ligands and cofactors

scientific article published in 2022

Analysis and validation of overall N-glycan conformation in Privateer

scientific article published in 2023

Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank

scientific article

Building and rebuilding N-glycans in protein structure models

scientific article published on 04 April 2019

Characterisation and structure determination of a llama-derived nanobody targeting the J-base binding protein 1

Characterization and structure determination of a llama-derived nanobody targeting the J-base binding protein 1

Detection of trans-cis flips and peptide-plane flips in protein structures

scientific article

Facilities that make the PDB data collection more powerful

scientific article published on 02 December 2019

High-resolution structure of the M14-type cytosolic carboxypeptidase fromBurkholderia cenocepaciarefined exploitingPDB_REDOstrategies

scientific article

Homology modelling and spectroscopy, a never-ending love story.

scientific article published on 29 August 2009

Homology-based hydrogen bond information improves crystallographic structures in the PDB

Homology-based hydrogen bond information improves crystallographic structures in the PDB.

scientific article published on 23 November 2017

Homology-based loop modeling yields more complete crystallographic protein structures

article by Bart van Beusekom et al published 1 September 2018 in IUCrJ

Homology-based loop modelling yields more complete crystallographic protein structures

LAHMA: structure analysis through local annotation of homology-matched amino acids

scientific article published on 01 January 2021

Making glycoproteins a little bit sweeter with PDB-REDO

scientific article published on 26 July 2018

Model building and beyond

scientific article published in 2022

Modelling covalent linkages in CCP4

scientific article published in 2021

New restraints and validation approaches for nucleic acid structures in PDB-REDO

scientific article published in 2021

PDB Improvement Starts with Data Deposition

scientific article published in Science

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

scientific article

PDB_REDO: constructive validation, more than just looking for errors

scientific article published on 16 March 2012

Re-refinement from deposited X-ray data can deliver improved models for most PDB entries

scientific article

Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification

scientific article

Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding

scientific article published on 19 August 2006

The CCP4 suite: integrative software for macromolecular crystallography

scientific article published in 2023

The PDB_REDO server for macromolecular structure model optimization

scientific article

The first step of peptide selection in antigen presentation by MHC class I molecules

scientific article

The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites

scientific article published on 29 July 2013

The missing link: covalent linkages in structural models

scientific article published in 2021

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1

scientific article

Timely deposition of macromolecular structures is necessary for peer review

scientific article

Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed

scientific article published in 2022

Tryptophan depletion results in tryptophan-to-phenylalanine substitutants

scientific article published on 09 March 2022

Understanding inhibitor resistance in Mps1 kinase through novel biophysical assays and structures.

scientific article

Updated restraint dictionaries for carbohydrates in the pyranose form

scientific article published in 2022

Validation and correction of Zn-CysxHisy complexes.

scientific article

List of works by Robbie P. Joosten

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

A crystal structure of the human protein kinase Mps1 reveals an ordered conformation of the activation loop

A new generation of crystallographic validation tools for the protein data bank

A series of PDB related databases for everyday needs

A series of PDB-related databanks for everyday needs.

AlphaFill: enriching AlphaFold models with ligands and cofactors

Analysis and validation of overall <i>N</i>-glycan conformation in <i>Privateer</i>

Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank

Building and rebuilding N-glycans in protein structure models

Characterisation and structure determination of a llama-derived nanobody targeting the J-base binding protein 1

Characterization and structure determination of a llama-derived nanobody targeting the J-base binding protein 1

Detection of trans-cis flips and peptide-plane flips in protein structures

Facilities that make the PDB data collection more powerful

High-resolution structure of the M14-type cytosolic carboxypeptidase fromBurkholderia cenocepaciarefined exploitingPDB_REDOstrategies

Homology modelling and spectroscopy, a never-ending love story.

Homology-based hydrogen bond information improves crystallographic structures in the PDB

Homology-based hydrogen bond information improves crystallographic structures in the PDB.

Homology-based loop modeling yields more complete crystallographic protein structures

Homology-based loop modelling yields more complete crystallographic protein structures

LAHMA: structure analysis through local annotation of homology-matched amino acids

Making glycoproteins a little bit sweeter with PDB-REDO

Model building and beyond

Modelling covalent linkages in <i>CCP</i>4

New restraints and validation approaches for nucleic acid structures in <i>PDB-REDO</i>

PDB Improvement Starts with Data Deposition

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

PDB_REDO: constructive validation, more than just looking for errors

Re-refinement from deposited X-ray data can deliver improved models for most PDB entries

Structure of NPP1, an ectonucleotide pyrophosphatase/phosphodiesterase involved in tissue calcification

Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding

The <i>CCP</i>4 suite: integrative software for macromolecular crystallography

The PDB_REDO server for macromolecular structure model optimization

The first step of peptide selection in antigen presentation by MHC class I molecules

The good, the bad and the dubious: VHELIBS, a validation helper for ligands and binding sites

The missing link: covalent linkages in structural models

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1

Timely deposition of macromolecular structures is necessary for peer review

Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed

Tryptophan depletion results in tryptophan-to-phenylalanine substitutants

Understanding inhibitor resistance in Mps1 kinase through novel biophysical assays and structures.

Updated restraint dictionaries for carbohydrates in the pyranose form

Validation and correction of Zn-CysxHisy complexes.