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List of works by Nicolas Rodriguez

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

scientific article

BioModels Database: curation and annotation

BioModels: Content, Features, Functionality, and Use

scientific article

BioModels: ten-year anniversary

scientific article

COMBINE Archive Specification Version 1.

scientific article published on 4 September 2015

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

scientific article

Controlled vocabularies and semantics in systems biology

scientific article (publication date: 25 October 2011)

Designing and encoding models for synthetic biology

scientific article published on April 2009

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

scientific article

JSBML: a flexible Java library for working with SBML.

scientific article

MELTING, a flexible platform to predict the melting temperatures of nucleic acids

scientific article

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

article by Dagmar Waltemath et al published 15 March 2014 in Standards in genomic sciences

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees

scientific article

Path2Models: large-scale generation of computational models from biochemical pathway maps

scientific article

Qualitative translation of relations from BioPAX to SBML qual

scientific article (publication date: 15 October 2012)

SBML Level 3: an extensible format for the exchange and reuse of biological models

scientific article published on 01 August 2020

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

scientific article

SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML)

scientific article

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

scientific article published on 06 July 2020

The systems biology format converter

scientific article

The systems biology simulation core algorithm

scientific article

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