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List of works by Brad Chapman

A comparative phylogenetic approach for dating whole genome duplication events

scientific article published in January 2004

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython

scientific article

Biopython: freely available Python tools for computational molecular biology and bioinformatics

scientific article

Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

scholarly article

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community

scientific article

CloudMan as a platform for tool, data, and analysis distribution

scientific article

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge

scientific article

Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity

scientific article published on April 2004

Comparison of illumina and 454 deep sequencing in participants failing raltegravir-based antiretroviral therapy

scientific article

Engineering enzyme specificity using computational design of a defined-sequence library

scientific article

Galaxy CloudMan: delivering cloud compute clusters

scientific article

Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.

scientific article

Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence

scientific article published on 23 December 2012

Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon

scientific article published on 18 September 2006

Pairwise selection assembly for sequence-independent construction of long-length DNA.

scientific article published on March 2010

Structure and evolution of cereal genomes

scientific article published on December 2003

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons

scientific article published on 24 November 2011

The genomic binding sites of a noncoding RNA.

scientific article published on 5 December 2011

Toward interoperable bioscience data

scientific article (publication date: 27 January 2012)

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

scientific article (publication date: 27 March 2003)

Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy

scientific article published on June 2012

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