List of works by Karin Verspoor

A Semantic-Based K-Anonymity Scheme for Health Record Linkage

scientific article

A Semantics-Enhanced Language Model for Unsupervised Word Sense Disambiguation

A UIMA wrapper for the NCBO annotator

scientific article

A categorical analysis of coreference resolution errors in biomedical texts

scientific article published on 26 February 2016

A categorization approach to automated ontological function annotation

scientific article

A close look at protein function prediction evaluation protocols

scientific article published on 14 September 2015

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

scientific article

A large-scale evaluation of computational protein function prediction

scientific article

A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning

scientific article (publication date: 5 December 2016)

A two-tiered unsupervised clustering approach for drug repositioning through heterogeneous data integration.

scientific article published on 11 April 2018

Acquisition and evaluation of verb subcategorization resources for biomedicine

scientific article published on 22 January 2013

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Analysing Health Professionals' Learning Interactions in an Online Social Network: A Longitudinal Study

scientific article published in January 2016

Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database.

scientific article published on 26 June 2014

Annotating the biomedical literature for the human variome.

scientific article published on 12 April 2013

Applied Text Mining

Appraising the Quality of Systematic Reviews for Age-Related Macular Degeneration Interventions

scientific article published on 01 September 2018

Approaches to verb subcategorization for biomedicine

scientific article published on 28 December 2012

Approximate subgraph matching-based literature mining for biomedical events and relations

scientific article

Artificial intelligence for clinical decision support in neurology

scientific article published on 09 July 2020

Assessing the impact of case sensitivity and term information gain on biomedical concept recognition

scientific article

Associating disease-related genetic variants in intergenic regions to the genes they impact

scientific article

Automated Detection of Records in Biological Sequence Databases that are Inconsistent with the Literature

Automated assessment of biological database assertions using the scientific literature.

scientific article published on 29 April 2019

Automated detection of records in biological sequence databases that are inconsistent with the literature.

scientific article published on 14 June 2017

Automatic English-Chinese name transliteration for development of multilingual resources

article

Automatic consistency assurance for literature-based gene ontology annotation

scientific article published in 2021

Benchmarks for Measurement of Duplicate Detection Methods in Nucleotide Databases

article

Benchmarks for measurement of duplicate detection methods in nucleotide databases

scientific article published on 8 January 2017

Better Health Explorer

article

Better health information exploration

article

Big data in medicine is driving big changes

scientific article

BioC interoperability track overview

scientific article

BioC: a minimalist approach to interoperability for biomedical text processing

scientific article

BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics

article by Qingyu Chen et al published 1 January 2018 in Database

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

BioLemmatizer: a lemmatization tool for morphological processing of biomedical text

scientific article

Biomedical Text Mining: State-of-the-Art, Open Problems and Future Challenges

CQADupStack

ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents

scientific article published on 25 March 2021

Characterising the Scope of Exposome Research: A Generalisable Approach.

scientific article published in January 2017

Characterizing the Scope of Exposome Research Through Topic Modeling and Ontology Analysis

scientific article published on 01 August 2019

ChemTables: a dataset for semantic classification on tables in chemical patents

scientific article

Combining heterogeneous data sources for accurate functional annotation of proteins.

scientific article

Concept annotation in the CRAFT corpus

scientific article

Conceptualising health information seeking behaviours and exploratory search: result of a qualitative study

article

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

scientific article

Coreference resolution improves extraction of Biological Expression Language statements from texts

scientific article published on 03 July 2016

DETECTION OF PROTEIN CATALYTIC SITES IN THE BIOMEDICAL LITERATURE

Describing the antimicrobial usage patterns of companion animal veterinary practices; free text analysis of more than 4.4 million consultation records

scientific article published on 13 March 2020

Designing Health Websites Based on Users' Web-Based Information-Seeking Behaviors: A Mixed-Method Observational Study.

scientific article published on 06 June 2016

Detection of protein catalytic sites in the biomedical literature

scientific article published on January 2013

Developing a Manually Annotated Corpus of Clinical Letters for Breast Cancer Patients on Routine Follow-Up

scientific article published in January 2017

Development of a Self-Harm Monitoring System for Victoria

scientific article published on 15 December 2020

Diagnostic Machine Learning Models for Acute Abdominal Pain: Towards an e-Learning Tool for Medical Students

scientific article published in January 2017

DrKnow: A Diagnostic Learning Tool with Feedback from Automated Clinical Decision Support

scientific article published on 05 December 2018

Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study

scientific article

Duplicates, redundancies, and inconsistencies in the primary nucleotide databases: a descriptive study

Dynamic document delivery: generating natural language texts on demand

End-to-End Neural Relation Extraction Using Deep Biaffine Attention

scientific article published in 2019

Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts

scientific article

Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct

scientific article published on 18 March 2015

Evaluating the Performance of Various Machine Learning Algorithms to Detect Subclinical Keratoconus

scientific article published on 24 April 2020

Evaluating the dose, indication and agreement with guidelines of antimicrobial use in companion animal practice with natural language processing

scientific article published in 2022

Evaluation of a Machine Learning Duplicate Detection Method for Bioinformatics Databases

scholarly article published 2015

Evaluation of consensus strategies for haplotype phasing

scientific article published on 25 November 2020

Exploiting Term Relations for Semantic Hierarchy Construction

Exploiting graph kernels for high performance biomedical relation extraction

scientific article published on 30 January 2018

Exploring effective approaches for haplotype block phasing

scientific article published on 30 October 2019

Exploring species-based strategies for gene normalization.

scientific article

Extracting structured information from free-text medication prescriptions using dependencies

Finding and Exploring Health Information with a Slider-Based User Interface

scientific article published on January 2016

From POS tagging to dependency parsing for biomedical event extraction

scientific article published on 12 February 2019

HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA.

scientific article

High-precision biological event extraction with a concept recognizer

scientific article published in 2009

Integrating UIMA with Alveo, a human communication science virtual laboratory

Interoperability of text corpus annotations with the semantic web.

scientific article published on 6 August 2015

Knowledge Integration in OpenWorlds: Utilizing the Mathematics of Hierarchical Structure

LARGE-SCALE TESTING OF BIBLIOME INFORMATICS USING PFAM PROTEIN FAMILIES

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

scientific article (publication date: 26 February 2014)

Large-scale testing of bibliome informatics using Pfam protein families.

scientific article published in January 2006

Learning Biological Sequence Types Using the Literature

Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System

article

Literature Consistency of Bioinformatics Sequence Databases is Effective for Assessing Record Quality

Literature consistency of bioinformatics sequence databases is effective for assessing record quality.

scientific article

Literature mining of genetic variants for curation: quantifying the importance of supplementary material

scientific article published on 10 February 2014

Literature mining of protein-residue associations with graph rules learned through distant supervision

scientific article

Mapping biomedical vocabularies: a semi-automated term matching approach.

scientific article published on January 2014

Multi-field query expansion is effective for biomedical dataset retrieval.

scientific article published in January 2017

Mutation extraction tools can be combined for robust recognition of genetic variants in the literature

scientific article

Ontology quality assurance through analysis of term transformations

scientific article published on June 2009

Optimizing graph-based patterns to extract biomedical events from the literature

scientific article published on 30 October 2015

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources

scientific article

PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data

scientific article published on 22 July 2020

Positive-Unlabeled Learning for inferring drug interactions based on heterogeneous attributes.

scientific article

Protein annotation as term categorization in the gene ontology using word proximity networks

scientific article

Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases

scientific article published on 08 July 2020

Quantifying semantic similarity of clinical evidence in the biomedical literature to facilitate related evidence synthesis

scientific article published on 30 October 2019

Representing annotation compositionality and provenance for the Semantic Web.

scientific article

Roles for text mining in protein function prediction

scientific article published on January 2014

Search Effectiveness in Nonredundant Sequence Databases: Assessments and Solutions

scientific article published on 24 December 2018

Special issue on bio-ontologies and phenotypes

scientific article

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

scientific article published on 14 July 2014

Supervised Learning for Detection of Duplicates in Genomic Sequence Databases

scientific article

TOWARDS EARLY DISCOVERY OF SALIENT HEALTH THREATS: A SOCIAL MEDIA EMOTION CLASSIFICATION TECHNIQUE.

scientific article published on January 2016

Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources

scientific article

Text mining improves prediction of protein functional sites

scientific article

The CHEMDNER corpus of chemicals and drugs and its annotation principles

scientific article

The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia

scientific article

The Use of Web-Based Technologies in Health Research Participation: Qualitative Study of Consumer and Researcher Experiences

article

The Use of Web-Based Technologies in Health Research Participation: Qualitative Study of Consumer and Researcher Experiences (Preprint)

article

The gene normalization task in BioCreative III

scientific article (publication date: 3 October 2011)

The randomized information coefficient: assessing dependencies in noisy data

The structural and content aspects of abstracts versus bodies of full text journal articles are different

scientific article

The textual characteristics of traditional and Open Access scientific journals are similar

scientific article

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

scientific article published on 12 December 2016

Towards a Methodology for Nursing-Specific Clinical Decision Support Systems (CDSS)

Towards a semantic lexicon for biological language processing

scientific article

U-Compare bio-event meta-service: compatible BioNLP event extraction services

scientific article (publication date: 18 December 2011)

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks

scientific article published on September 2008

Understanding Health Professionals' Informal Learning in Online Social Networks: A Cross-Sectional Survey

scientific article

Understanding the Context of Learning in an Online Social Network for Health Professionals' Informal Learning

scientific article published in January 2017

Use of cefovecin in dogs and cats attending first-opinion veterinary practices in Australia

scientific article published on 21 August 2020

Visualization and Language Processing for Supporting Analysis across the Biomedical Literature

scholarly article by Carsten Görg et al published 2010 in Lecture Notes in Computer Science

What Can We Get From 1000 Tokens? A Case Study of Multilingual POS Tagging For Resource-Poor Languages

WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking

scientific article published in 2020

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