Search filters

List of works by Sameer Velankar

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

scientific article published in 2022

A structural biology community assessment of AlphaFold2 applications

scientific article published in 2022

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Automatic annotation of protein residues in published papers

scientific article published on 05 November 2019

BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management

scientific article published on 19 October 2020

BioJS: an open source JavaScript framework for biological data visualization

scientific article

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

scientific article

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

scientific article

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

scientific article published in 2024

E-MSD: an integrated data resource for bioinformatics

scientific article

E-MSD: an integrated data resource for bioinformatics.

scientific article

E-MSD: improving data deposition and structure quality

scientific article

E-MSD: the European Bioinformatics Institute Macromolecular Structure Database

scientific article

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023

scientific article published on 28 November 2023

EMDataBank.org: unified data resource for CryoEM

scientific article

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

scientific article published on 25 November 2019

Finding enzyme cofactors in Protein Data Bank

scientific article published on 01 September 2019

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

scientific article

Genome3D: exploiting structure to help users understand their sequences

scientific article

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

scientific article published on 01 January 2020

High-performance macromolecular data delivery and visualization for the web

scientific article published on 26 November 2020

High-performance macromolecular data delivery and visualization for the web. Corrigendum

scientific article published on 01 January 2021

Highly accurate protein structure prediction for the human proteome

Implementing an X-ray validation pipeline for the Protein Data Bank

scientific article

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

scientific article published in November 2017

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition

scientific article published on 16 November 2016

Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition

scientific article published on 30 December 2019

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

scientific article

New restraints and validation approaches for nucleic acid structures in <i>PDB-REDO</i>

scientific article published in 2021

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

scientific article (publication date: March 2017)

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

scientific article published on 18 June 2015

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

scientific article

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

scientific article published in 2024

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models

scientific article

PDBe: Protein Data Bank in Europe

scientific article published on 27 November 2013

PDBe: Protein Data Bank in Europe

scientific article published on 2 November 2010

PDBe: Protein Data Bank in Europe

scientific article published on 21 November 2011

PDBe: Protein Data Bank in Europe

article

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

scientific article published on 17 October 2015

PDBe: improved findability of macromolecular structure data in the PDB

scientific article published on 01 January 2020

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

scientific article published on 6 November 2017

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

scientific article published in 2021

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

scientific article (publication date: 29 June 2011)

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources

scientific article

Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

scientific article

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

scientific article

Remediation of the protein data bank archive

scientific article

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

scientific article (publication date: 2013)

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

scientific article published on 01 January 2019

SOAP-based services provided by the European Bioinformatics Institute

scientific article

Straightforward and complete deposition of NMR data to the PDBe

scientific article

Structural biology data archiving - where we are and what lies ahead

scholarly article by Gerard Kleywegt published in June 2018

Structural biology: The transformational era

scientific article published in September 2023

The <i>CCP</i>4 suite: integrative software for macromolecular crystallography

scientific article published in 2023

The EBI enzyme portal

scientific article

The Protein Data Bank in Europe (PDBe): bringing structure to biology

scientific article

The archiving and dissemination of biological structure data

scientific article

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

scientific article published on 10 November 2017

The complex portal--an encyclopaedia of macromolecular complexes

scientific article

The role of structural bioinformatics resources in the era of integrative structural biology

scientific article

Unconventional interactions between water and heterocyclic nitrogens in protein structures

scientific article

UniChem: a unified chemical structure cross-referencing and identifier tracking system

scientific article (publication date: 14 January 2013)

Validation of Structures in the Protein Data Bank

scientific article published on 21 November 2017

Validation of ligands in macromolecular structures determined by X-ray crystallography.

scientific article

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

scientific article published on 7 February 2018

Worldwide Protein Data Bank validation information: usage and trends.

scientific article

Paulina is supported by:

About Paulina

Help