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List of works by Jakub Galgonek

A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL

scientific article published in 2023

Advanced SPARQL querying in small molecule databases

scientific article (publication date: 2016)

Amino Acid Interaction (INTAA) web server

scientific article

Computational methods for the description of pharmacologically relevant platinum complexes – molecular structure and bond dissociation

scholarly article by Malte Kokoschka et al published 2016 in Physical Chemistry Chemical Physics

Correction to: Interoperable chemical structure search service

publication published on 13 February 2020

Density-based classification of protein structures using iterative TM-score

IDSM ChemWebRDF: SPARQLing small-molecule datasets

scientific article

Interoperable chemical structure search service

scientific article published on 28 June 2019

On InChI and evaluating the quality of cross-reference links

scientific article (publication date: 2014)

On the Effectiveness of Distances Measuring Protein Structure Similarity

On the Parallelization of the SProt Measure and the TM-Score Algorithm

P3S: Protein Structure Similarity Search

Protein sequences identification using NM-tree

SMILE – A Framework for Semantic Applications

SProt - from local to global protein structure similarity

SProt: sphere-based protein structure similarity algorithm.

scientific article

Sachem: a chemical cartridge for high-performance substructure search.

scientific article

SimTandem: Similarity Search in Tandem Mass Spectra

The IDSM mass spectrometry extension: searching mass spectra using SPARQL

scientific article published on 29 March 2024

The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata

scholarly article (preprint) by Adriano Rutz published in March 2021

The LOTUS initiative for open knowledge management in natural products research ⬇️

scholarly article by Adriano Rutz et al. published in May 2022

Toward Ab Initio Protein Folding: Inherent Secondary Structure Propensity of Short Peptides from the Bioinformatics and Quantum-Chemical Perspective

scientific article published on 31 January 2019

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