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List of works by Alex A Freitas

A Genetic Algorithm for Optimizing the Label Ordering in Multi-label Classifier Chains

article

A Genetic Algorithm-based Auto-ML System for Survival Analysis

scientific article published on 21 May 2024

A Global-Model Naive Bayes Approach to the Hierarchical Prediction of Protein Functions

article

A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms

article

A Hybrid Evolutionary Approach for the Protein Classification Problem

A Hybrid PSO/ACO Algorithm for Discovering Classification Rules in Data Mining

article

A Hybrid Rule-Induction/Likelihood-Ratio Based Approach for Predicting Protein-Protein Interactions

scholarly article published 2009

A Lexicographic Multi-Objective Genetic Algorithm for Multi-Label Correlation Based Feature Selection

A New Classification-Rule Pruning Procedure for an Ant Colony Algorithm

A Novel Extended Hierarchical Dependence Network Method Based on Non-hierarchical Predictive Classes and Applications to Ageing-Related Data

article

A Review of Evolutionary Algorithms for Data Mining

article

A Survey of Evolutionary Algorithms for Data Mining and Knowledge Discovery

scholarly article by Alex A Freitas published 2003 in Natural computing series

A Survey of Evolutionary Algorithms for Decision-Tree Induction

scholarly article by Rodrigo Coelho Barros et al published May 2012 in IEEE Transactions on Systems, Man and Cybernetics, Part C: Applications and Reviews

A Tutorial on Hierarchical Classification with Applications in Bioinformatics

A constrained-syntax genetic programming system for discovering classification rules: application to medical data sets

scientific article

A critical review of multi-objective optimization in data mining

article

A data mining approach for classifying DNA repair genes into ageing-related or non-ageing-related

scientific article

A genetic programming method for protein motif discovery and protein classification

A grammatical evolution algorithm for generation of Hierarchical Multi-Label Classification rules

A hierarchical multi-label classification ant colony algorithm for protein function prediction

article published in 2010

A hierarchical neural network for predicting protein functions

A hybrid PSO/ACO algorithm for classification

A hybrid decision tree/genetic algorithm method for data mining

A hybrid particle swarm/ant colony algorithm for the classification of hierarchical biological data

A review and appraisal of the DNA damage theory of ageing ⬇️

scientific article published on May 10, 2011

A review of supervised machine learning applied to ageing research

scientific article published on 6 March 2017

A survey of hierarchical classification across different application domains

ABC-Miner: An Ant-Based Bayesian Classification Algorithm

ACO-Based Bayesian Network Ensembles for the Hierarchical Classification of Ageing-Related Proteins

AISEC: an artificial immune system for e-mail classification

Alignment-Independent Techniques for Protein Classification

An Ant Colony Algorithm for Classification Rule Discovery

An Efficient Algorithm for Hierarchical Classification of Protein and Gene Functions

article

An Evolutionary Approach for Motif Discovery and Transmembrane Protein Classification

article published in 2005

An Extended Local Hierarchical Classifier for Prediction of Protein and Gene Functions

article

An Extensive Empirical Comparison of Probabilistic Hierarchical Classifiers in Datasets of Ageing-Related Genes.

scientific article published on 03 December 2015

An Extensive Evaluation of Decision Tree-Based Hierarchical Multilabel Classification Methods and Performance Measures

An empirical evaluation of hierarchical feature selection methods for classification in bioinformatics datasets with gene ontology-based features

article

Ant Colony Algorithms for Data Classification

scholarly article

Automatic design of decision-tree algorithms with evolutionary algorithms

scientific article

Automating the Design of Data Mining Algorithms

article

Classification with cluster-based Bayesian multi-nets using Ant Colony Optimisation

article

Classification-Rule Discovery with an Ant Colony Algorithm

article

Comparing multilabel classification methods for provisional biopharmaceutics class prediction.

scientific article published in December 2014

Comprehensible classification models

article

Conclusions

Coping with unbalanced class data sets in oral absorption models

scientific article

Data Mining and Knowledge Discovery with Evolutionary Algorithms

scholarly article by Alex A Freitas published 2002 in Natural computing series

Decision trees to characterise the roles of permeability and solubility on the prediction of oral absorption

scientific article published on 04 December 2014

Decision-Tree Induction

Dependency network methods for Hierarchical Multi-label Classification of gene functions

article

Discovering Fuzzy Classification Rules with Genetic Programming and Co-evolution

Discovering New Rule Induction Algorithms with Grammar-based Genetic Programming

scholarly article published 2008

Discovering comprehensible classification rules with a genetic algorithm

Evolutionary Algorithms and Hyper-Heuristics

scholarly article published 2015

Evolutionary Algorithms for Data Mining

article

Evolutionary Design of Decision-Tree Algorithms Tailored to Microarray Gene Expression Data Sets

article

Evolutionary model tree induction

Extending multi-label feature selection with KEGG pathway information for microarray data analysis

article published in 2014

Extending the ABC-Miner Bayesian Classification Algorithm

GPCRTree: online hierarchical classification of GPCR function

scientific article

Genetic Programming for Automatically Constructing Data Mining Algorithms

scholarly article

Guest editorial data mining and knowledge discovery with evolutionary algorithms

scholarly article by A. Ghosh & Alex A Freitas published December 2003 in IEEE Transactions on Evolutionary Computation

Handling continuous attributes in Ant Colony Classification algorithms

scholarly article published March 2009

Hierarchical classification of protein function with ensembles of rules and particle swarm optimisation

Improving the Interpretability of Classification Rules Discovered by an Ant Colony Algorithm: Extended Results

scientific article

Improving the Interpretability of Classification Rules in Sparse Bioinformatics Datasets

Improving the Performance of Hierarchical Classification with Swarm Intelligence

Improving the cAnt-MinerPB Classification Algorithm

article

Improving the interpretability of classification rules discovered by an ant colony algorithm

article published in 2013

Introduction

LEGAL-tree

MAHATMA: A Genetic Programming-Based Tool for Protein Classification

Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data.

scientific article

Multi-label Hierarchical Classification of Protein Functions with Artificial Immune Systems

article

Multiple pheromone types and other extensions to the Ant-Miner classification rule discovery algorithm

New KEGG pathway-based interpretable features for classifying ageing-related mouse proteins

scientific article published on 17 June 2016

New Results for a Hybrid Decision Tree/Genetic Algorithm for Data Mining

Novel top-down approaches for hierarchical classification and their application to automatic music genre classification

On the hierarchical classification of G protein-coupled receptors

scientific article published on 22 October 2007

On the importance of comprehensible classification models for protein function prediction

scientific article published on January 2010

Optimizing amino acid groupings for GPCR classification

scientific article published in August 2008

Particle swarm and bayesian networks applied to attribute selection for protein functional classification

Positive-Unlabelled learning for identifying new candidate Dietary Restriction-related genes among ageing-related genes

scientific article published in 2024

Pre-processing feature selection for improved C&RT models for oral absorption.

scientific article

Predicting post-synaptic activity in proteins with data mining

scientific article

Predicting the Pro-Longevity or Anti-Longevity Effect of Model Organism Genes with New Hierarchical Feature Selection Methods

scientific article published on March 2015

Predicting volume of distribution with decision tree-based regression methods using predicted tissue:plasma partition coefficients

scientific article (publication date: 2015)

Prediction of the pro-longevity or anti-longevity effect of Caenorhabditis Elegans genes based on Bayesian classification methods

article

Present perspectives on the automated classification of the G-protein coupled receptors (GPCRs) at the protein sequence level

scientific article published on January 2011

Probabilistic Clustering for Hierarchical Multi-Label Classification of Protein Functions

Protein Interaction Inference Using Particle Swarm Optimization Algorithm

Proteomic applications of automated GPCR classification

scientific article published on August 2007

Robust autonomous detection of the defective pixels in detectors using a probabilistic technique

scientific article published on December 2008

Simultaneous Prediction of four ATP-binding Cassette Transporters' Substrates Using Multi-label QSAR.

scientific article published in September 2016

Systematic analysis of the gerontome reveals links between aging and age-related diseases

scientific article

The impact of training set data distributions for modelling of passive intestinal absorption.

scientific article

Two Extensions to Multi-label Correlation-Based Feature Selection: A Case Study in Bioinformatics

Understanding the crucial differences between classification and discovery of association rules

Utilizing multiple pheromones in an ant-based algorithm for continuous-attribute classification rule discovery

WAIRS: improving classification accuracy by weighting attributes in the AIRS classifier

article

Web Page Classification with an Ant Colony Algorithm

cAnt-Miner: An Ant Colony Classification Algorithm to Cope with Continuous Attributes

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