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List of works by Gert-Jan Bekker

Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor

scientific article published on 8 May 2017

Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations

scientific article published on 12 March 2019

Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking

scientific article published on 08 April 2020

Metal binding to cutinase-like enzyme from Saccharomonospora viridis AHK190 and its effects on enzyme activity and stability

scientific article published on 01 August 2019

Molmil: a molecular viewer for the PDB and beyond

scientific article

Mutual population-shift driven antibody-peptide binding elucidated by molecular dynamics simulations

scientific article published on 29 January 2020

New tools and functions in Data-out activities at Protein Data Bank Japan (PDBj).

scientific article

Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle

scientific article published on 27 August 2018

Structural and thermodynamic characterization of endo-1,3-β-glucanase: Insights into the substrate recognition mechanism

scientific article

The Biological Structure Model Archive (BSM-Arc): an archive for in silico models and simulations

scientific article published on 05 February 2020

Thermal stability of single domain antibodies estimated by molecular dynamics simulations

article