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List of works by Lukáš Pravda

Anatomy of enzyme channels

scientific article

AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules

scientific article (publication date: 2015)

Biomacromolecular Fragments and Patterns

Channel Characteristics

ChannelsDB: database of biomacromolecular tunnels and pores

scientific article published on 3 October 2017

Characterization via Charges

Complete Process of Data Extraction and Analysis

Concluding Remarks

Detection and Extraction of Fragments

Detection of Channels

Exercises Solution

Finding enzyme cofactors in Protein Data Bank

scientific article published on 01 September 2019

Introduction

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

scientific article published in November 2017

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

scientific article (publication date: 16 August 2013)

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).

scientific article published in July 2018

Mole 2.5 - Tool for Detection and Analysis of Macromolecular Pores and Channels

scholarly article by Karel Berka et al published February 2017 in Biophysical Journal

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

scientific article

PDBe: improved findability of macromolecular structure data in the PDB

scientific article published on 01 January 2020

PDBsum: Structural summaries of PDB entries

scientific article published on 5 September 2017

PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

scientific article

Structural Bioinformatics Databases of General Use

Structural Bioinformatics Tools for Drug Design

The Diversity of Yellow-Related Proteins in Sand Flies (Diptera: Psychodidae).

scientific article

The Eighth Central European Conference "Chemistry towards Biology": Snapshot

scientific article (publication date: 17 October 2016)

Validation

book chapter in Structural Bioinformatics Tools for Drug Design (2016)

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

scientific article

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