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List of works by Ilya Shindyalov

A case study of high-throughput biological data processing on parallel platforms.

scientific article

A comparative proteomics resource: proteins of Arabidopsis thaliana

scientific article

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

scientific article

A new algorithm for the alignment of multiple protein structures using Monte Carlo optimization.

scientific article

A new scoring function and associated statistical significance for structure alignment by CE.

scientific article

An alternative view of protein fold space

scientific article

Analysis of peptides from known proteins: clusterization in sequence space.

scientific article

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology

scientific article

Building an automated classification of DNA-binding protein domains.

scientific article

CE-MC: a multiple protein structure alignment server.

scientific article

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase

scientific article

CKAAPs DB: a conserved key amino acid positions database

scientific article published in January 2001

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

scientific article

Common EF-hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations

scientific article

Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins.

scientific article

DMAPS: a database of multiple alignments for protein structures

scientific article

Design and application of PDBlib, a C++ macromolecular class library

scientific article published on December 1994

Design and application of a C++ macromolecular class library

scientific article published on January 1, 1994

Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices

scientific article published in 1992

Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.

scientific article published in December 1992

Identification of cDNA sequences by specific oligonucleotide sets. Computer tool and application

scientific article published on January 1, 1995

Macromolecular query language (MMQL): prototype data model and implementation

scientific article published on November 1994

Macromolecular structure databases: past progress and future challenges

scientific article published on November 1998

PDP: protein domain parser

scientific article published in February 2003

Partitioning protein structures into domains: why is it so difficult?

scientific article (publication date: 18 August 2006)

Protein data representation and query using optimized data decomposition ⬇️

scientific article published on October 1, 1997

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path ⬇️

scientific article (publication date: September 1998)

Structure comparison and alignment

scientific article

The Protein Data Bank

scientific article

The protein kinase resource

scientific article (publication date: November 1997)

The status of structural genomics defined through the analysis of current targets and structures

scientific article published on January 2004

Toward consistent assignment of structural domains in proteins

scientific article (publication date: 4 June 2004)

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