List of works - Jhih-Wei Chu

"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution

scientific article (publication date: March 2011)

A comprehensive picture of non-site specific oxidation of methionine residues by peroxides in protein pharmaceuticals

scientific article published in December 2004

A structural and mechanistic study of the oxidation of methionine residues in hPTH(1-34) via experiments and simulations.

scientific article

An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states

scientific article published in Scientific Reports

Analysis of trajectory entropy for continuous stochastic processes at equilibrium

scientific article

Atomistic and coarse-grained analysis of double spectrin repeat units: the molecular origins of flexibility

scientific article published on 6 October 2006

Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops

scientific article published on 03 September 2020

Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids.

scientific article

Calculation of Enzyme Fluctuograms from All-Atom Molecular Dynamics Simulation

scientific article published on 20 June 2016

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model

scientific article

Decomposition of energy and free energy changes by following the flow of work along reaction path

scientific article published in October 2009

Degree of polymerization of glucan chains shapes the structure fluctuations and melting thermodynamics of a cellulose microfibril

scientific article published on 6 July 2012

Dissecting force interactions in cellulose deconstruction reveals the required solvent versatility for overcoming biomass recalcitrance

scientific article published on 12 August 2011

Dynamic mesoscale model of dipolar fluids via fluctuating hydrodynamics.

scientific article published in November 2014

Effects of antioxidants on the hydrogen peroxide-mediated oxidation of methionine residues in granulocyte colony-stimulating factor and human parathyroid hormone fragment 13-34.

scientific article published in December 2004

Effects of excipients on the hydrogen peroxide-induced oxidation of methionine residues in granulocyte colony-stimulating factor

scientific article

Electrophoretic Mobility of a Concentrated Suspension of Spherical Particles.

scientific article published in January 1999

Electrophoretic Mobility of a Sphere in a Spherical Cavity

scientific article published on 01 September 1998

Electrophoretic Mobility of a Spherical Particle in a Spherical Cavity.

scientific article published in December 1997

Entropy of cellulose dissolution in water and in the ionic liquid 1-butyl-3-methylimidazolim chloride

scientific article published on 17 April 2012

Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon.

scientific article

Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics

scientific article published in September 2013

Fluctuating hydrodynamics for multiscale modeling and simulation: energy and heat transfer in molecular fluids.

scientific article published in July 2012

Fluctuating hydrodynamics for multiscale simulation of inhomogeneous fluids: mapping all-atom molecular dynamics to capillary waves

scientific article published in July 2011

Illuminating the mechanistic roles of enzyme conformational dynamics

scholarly article

Importance of Internal Porosity for Glucan Adsorption in Mesoporous Carbon Materials.

scientific article

Inversion of radial distribution functions to pair forces by solving the Yvon-Born-Green equation iteratively

scientific article published in October 2009

LWD-TCP complex activates the morning gene CCA1 in Arabidopsis

scientific article published on 13 October 2016

Linking hydrophobicity and hydrodynamics by the hybrid fluctuating hydrodynamics and molecular dynamics methodologies

scientific article

Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations

scientific article published in December 2009

Molecular dynamics simulations and oxidation rates of methionine residues of granulocyte colony-stimulating factor at different pH values.

scientific article published in February 2004

On the mechanisms of oxidation of organic sulfides by H2O2 in aqueous solutions

scientific article

On the molecular origins of biomass recalcitrance: the interaction network and solvation structures of cellulose microfibrils

scientific article published in October 2010

On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

scientific article

Oxidation of methionine residues in aqueous solutions: free methionine and methionine in granulocyte colony-stimulating factor

scientific article published in December 2004

Preferential interactions between lithium chloride and glucan chains in N,N-dimethylacetamide drive cellulose dissolution

scientific article published on 20 March 2013

Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft

scientific article published on 15 September 2011

Reaction Path Optimization with Holonomic Constraints and Kinetic Energy Potentials

scientific article

Structural distributions from single-molecule measurements as a tool for molecular mechanics.

scientific article

Structure-mechanics statistical learning uncovers mechanical relay in proteins

scientific article published in 2022

Systems-level modeling with molecular resolution elucidates the rate-limiting mechanisms of cellulose decomposition by cellobiohydrolases

scientific article published on 15 August 2013

Thermodynamics of cellulose solvation in water and the ionic liquid 1-butyl-3-methylimidazolim chloride

scientific article published on 28 October 2011

Trajectory Entropy of Continuous Stochastic Processes at Equilibrium

scientific article published on 6 March 2014

List of works by Jhih-Wei Chu

"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution

A comprehensive picture of non-site specific oxidation of methionine residues by peroxides in protein pharmaceuticals

A structural and mechanistic study of the oxidation of methionine residues in hPTH(1-34) via experiments and simulations.

An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states

Analysis of trajectory entropy for continuous stochastic processes at equilibrium

Atomistic and coarse-grained analysis of double spectrin repeat units: the molecular origins of flexibility

Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops

Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids.

Calculation of Enzyme Fluctuograms from All-Atom Molecular Dynamics Simulation

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model

Decomposition of energy and free energy changes by following the flow of work along reaction path

Degree of polymerization of glucan chains shapes the structure fluctuations and melting thermodynamics of a cellulose microfibril

Dissecting force interactions in cellulose deconstruction reveals the required solvent versatility for overcoming biomass recalcitrance

Dynamic mesoscale model of dipolar fluids via fluctuating hydrodynamics.

Effects of antioxidants on the hydrogen peroxide-mediated oxidation of methionine residues in granulocyte colony-stimulating factor and human parathyroid hormone fragment 13-34.

Effects of excipients on the hydrogen peroxide-induced oxidation of methionine residues in granulocyte colony-stimulating factor

Electrophoretic Mobility of a Concentrated Suspension of Spherical Particles.

Electrophoretic Mobility of a Sphere in a Spherical Cavity

Electrophoretic Mobility of a Spherical Particle in a Spherical Cavity.

Entropy of cellulose dissolution in water and in the ionic liquid 1-butyl-3-methylimidazolim chloride

Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon.

Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics

Fluctuating hydrodynamics for multiscale modeling and simulation: energy and heat transfer in molecular fluids.

Fluctuating hydrodynamics for multiscale simulation of inhomogeneous fluids: mapping all-atom molecular dynamics to capillary waves

Illuminating the mechanistic roles of enzyme conformational dynamics

Importance of Internal Porosity for Glucan Adsorption in Mesoporous Carbon Materials.

Inversion of radial distribution functions to pair forces by solving the Yvon-Born-Green equation iteratively

LWD-TCP complex activates the morning gene CCA1 in Arabidopsis

Linking hydrophobicity and hydrodynamics by the hybrid fluctuating hydrodynamics and molecular dynamics methodologies

Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations

Molecular dynamics simulations and oxidation rates of methionine residues of granulocyte colony-stimulating factor at different pH values.

On the mechanisms of oxidation of organic sulfides by H2O2 in aqueous solutions

On the molecular origins of biomass recalcitrance: the interaction network and solvation structures of cellulose microfibrils

On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Oxidation of methionine residues in aqueous solutions: free methionine and methionine in granulocyte colony-stimulating factor

Preferential interactions between lithium chloride and glucan chains in N,N-dimethylacetamide drive cellulose dissolution

Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft

Reaction Path Optimization with Holonomic Constraints and Kinetic Energy Potentials

Structural distributions from single-molecule measurements as a tool for molecular mechanics.

Structure-mechanics statistical learning uncovers mechanical relay in proteins

Systems-level modeling with molecular resolution elucidates the rate-limiting mechanisms of cellulose decomposition by cellobiohydrolases

Thermodynamics of cellulose solvation in water and the ionic liquid 1-butyl-3-methylimidazolim chloride

Trajectory Entropy of Continuous Stochastic Processes at Equilibrium