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List of works by Zhangjun Fei

A <i>Citrullus</i> genus super‐pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication

scientific article published in 2023

A CLE-SUNN module regulates strigolactone content and fungal colonization in arbuscular mycorrhiza

scientific article published on 02 September 2019

A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon.

scientific article published on 10 September 2015

A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits

scientific article published on 01 November 2019

A dynamic evolutionary and functional landscape of plant phased small interfering RNAs.

scientific article published on 16 May 2015

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

scientific article

A key 'foxy' aroma gene is regulated by homology-induced promoter indels in the iconic juice grape 'Concord'

scientific article published on 18 April 2020

Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.

scientific article published on 7 November 2017

Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations

scientific article published on 30 October 2020

Author Correction: Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits

correction of a scholarly article

COI1 F-box proteins regulate DELLA protein levels, growth, and photosynthetic efficiency in maize

Cellular and molecular characterizations of a slow-growth variant provide insights into the fast growth of bamboo.

scientific article published on 25 October 2017

Chromosome-level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood)

scientific article published on 27 March 2020

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

scientific article

Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato

scientific article published on 14 February 2019

Complete genome assembly provides a high‐quality skeleton for <scp>pan‐NLRome</scp> construction in melon

Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development.

scientific article published on 22 June 2015

Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses

scientific article

Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors

scientific article published on 29 August 2017

Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus

scientific article published on 21 May 2019

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

scientific article

De novo and comparative transcriptome analysis of cultivated and wild spinach

scientific article

Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission

scientific article published on 23 August 2020

Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation

scientific article

Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple ( × )

article

Distinct Mechanisms of the ORANGE Protein in Controlling Carotenoid Flux

scientific article (publication date: 2017)

Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing.

scientific article

Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions

scientific article

Draft genome of the kiwifruit Actinidia chinensis

scientific article

Elucidation of the Mechanisms of Long-Distance mRNA Movement in a Nicotiana benthamiana/Tomato Heterograft System

scientific article published on 02 May 2018

Estimation of the Whitefly Bemisia tabaci Genome Size Based on k-mer and Flow Cytometric Analyses

scientific article published on 28 July 2015

Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (<i>Rosa hybrida</i>)

scientific article published in 2021

GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces

scientific article published on 23 November 2020

Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts

scientific article published on 13 October 2018

Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening

scientific article published on 24 September 2018

Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection

scientific article published on 07 May 2019

Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

scientific article published on 16 November 2020

Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement

scientific article published on 15 August 2017

Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes

scientific article

Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)

scientific article published on 01 April 2019

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

scientific article published in Nature Communications

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

scientific article

Genome-wide association studies provide insights into the genetic determination of fruit traits of pear

scientific article published on 18 February 2021

Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato

scientific article published in 2021

Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits

scientific article published in 2021

Genomic analyses provide insights into the history of tomato breeding

scientific article published on 12 October 2014

Genomic analyses reveal dead‐end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation

scientific article published in 2023

Genomic and pangenomic analyses provide insights into the population history and genomic diversification of bottle gourd

Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni

article

Graph pangenome captures missing heritability and empowers tomato breeding

scientific article published on 08 June 2022

Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber

scientific article published in 2022

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

scientific article

Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula.

scientific article published on 12 June 2017

Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato

scientific article published on 27 February 2019

KASP Genotyping as a Molecular Tool for Diagnosis of Cassava-Colonizing Bemisia tabaci

scientific article published on 14 May 2020

Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics

scientific article published on 01 August 2020

Manipulation of ZDS in Tomato Exposes Carotenoid- and ABA-Specific Effects on Fruit Development and Ripening

scientific article published on 14 March 2020

Messenger RNA exchange between scions and rootstocks in grafted grapevines

scientific article published on 19 October 2015

Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects

scientific article

Methylation of MdMYB1 locus mediated by RdDM pathway regulates anthocyanin biosynthesis in apple

scientific article published on 12 January 2020

Molecular basis of one‐step methyl anthranilate biosynthesis in grapes, sweet orange, and maize

Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication

scientific article published on 02 November 2020

Plant MetGenMAP: an integrative analysis system for plant systems biology

scientific article published on 9 October 2009

Related type 2C protein phosphatases Pic3 and Pic12 negatively regulate immunity in tomato to <i>Pseudomonas syringae</i>

Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits

scientific article published on 01 November 2019

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

scientific article published on 27 January 2013

Species-specific microsymbiont discrimination mediated by a <i>Medicago</i> receptor kinase

Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions

scientific article published on 27 July 2011

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton.

scientific article

The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees

scientific article

The PH gene determines fruit acidity and contributes to the evolution of sweet melons

scientific article published on 5 June 2014

The USDA cucumber ( L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development

scientific article published on 01 October 2018

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

scientific article published on 25 November 2012

The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

scientific article

The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening

scientific article published on 01 December 2020

The genome of the stress-tolerant wild tomato species Solanum pennellii.

scientific article published on 27 July 2014

The jet-like chromatin structure defines active secondary metabolism in fungi

The tomato gene contributes to regulation of fruit ripening

article

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

scientific article published on 13 May 2019

Transcriptional Responses of the Trichoplusia ni Midgut to Oral Infection by the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus

scientific article published on 28 June 2019

Transcriptome analysis provides insights into the regulation of metabolic processes during postharvest cold storage of loquat (Eriobotrya japonica) fruit

scientific article published on 06 April 2019

Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes

scientific article

Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana

scientific article published in Scientific Reports

Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development

scientific article published on 17 October 2018

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