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List of works by Michael J Cox

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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

scientific article
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article
The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis

scientific article
Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease.

scientific article
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

scientific article
Improved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing

scientific article published on March 28, 2012
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

scientific article
Dysbiosis anticipating necrotizing enterocolitis in very premature infants

scientific article published on 23 October 2014
Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

scientific article
Bacterial microbiota of the upper respiratory tract and childhood asthma

scientific article
Sequencing the human microbiome in health and disease.

scientific article
Airway Microbiota in Severe Asthma and Relationship to Asthma Severity and Phenotypes

scientific article
Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador

scientific article
Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes

scientific article published on 26 October 2010
Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants

scientific article published on 13 July 2015
Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencing

scientific article published on 26 September 2008
Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

scientific article
Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients

scientific article
Multilocus characterization scheme for shiga toxin-encoding bacteriophages.

scientific article published on 19 October 2007
Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota.

scientific article published on 12 February 2018
Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil

article
New opportunities for managing acute and chronic lung infections

scientific article published on October 24, 2017
Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

scientific article
Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

scientific article
Gut microbiota and protection from pneumococcal pneumonia

scientific article published in April 2016
A molecular comparison of microbial communities in bronchiectasis and cystic fibrosis

scientific article published in April 2013
Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

scientific article
Reagent contamination can critically impact sequence-based microbiome analyses

article
Outside In: Sequencing the Lung Microbiome

scientific article published in August 2015
Respiratory Viral Infection Alters the Gut Microbiota by Inducing Inappetence

scientific article published on 18 February 2020
Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

scientific article published on 9 July 2012
Comparison of the upper and lower airway microbiota in children with chronic lung diseases

scientific article published in PLoS ONE
Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia

preprint
A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease

article
Ventilator-associated pneumonia: when is a pathogen not a pathogen?

scientific article published on 2 May 2017
Genomic attributes of airway commensal bacteria and mucosa

scientific article published on 12 February 2024
Longitudinal development of the airway microbiota in infants with cystic fibrosis

article
Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring AMR bacterial pneumonia

scientific article published on 17 December 2020
Growing up with your airway microbiota: a risky business

scientific article published on 10 May 2019
Efficacy of antimicrobial and anti-viral coated air filters to prevent the spread of airborne pathogens

scientific article published on 09 March 2022
Author Correction: Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

scientific article published on 01 March 2019

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