List of works - Michael J Cox

A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease

article

A molecular comparison of microbial communities in bronchiectasis and cystic fibrosis

scientific article published in April 2013

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

scientific article

Airway Microbiota in Severe Asthma and Relationship to Asthma Severity and Phenotypes

scientific article

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

scientific article

Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

scientific article

Author Correction: Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

scientific article published on 01 March 2019

Bacterial microbiota of the upper respiratory tract and childhood asthma

scientific article

Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencing

scientific article published on 26 September 2008

Comparison of the upper and lower airway microbiota in children with chronic lung diseases

scientific article published in PLoS ONE

Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

scientific article

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

scientific article published on 9 July 2012

Dysbiosis anticipating necrotizing enterocolitis in very premature infants

scientific article published on 23 October 2014

Efficacy of antimicrobial and anti-viral coated air filters to prevent the spread of airborne pathogens

scientific article published on 09 March 2022

Growing up with your airway microbiota: a risky business

scientific article published on 10 May 2019

Gut microbiota and protection from pneumococcal pneumonia

scientific article published in April 2016

Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes

scientific article published on 26 October 2010

Improved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing ⬇️

scientific article published on March 28, 2012

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

scientific article

Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants

scientific article published on 13 July 2015

Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients

scientific article

Longitudinal development of the airway microbiota in infants with cystic fibrosis

article

Multilocus characterization scheme for shiga toxin-encoding bacteriophages.

scientific article published on 19 October 2007

Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

scientific article

Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease.

scientific article

Outside In: Sequencing the Lung Microbiome

scientific article published in August 2015

Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring AMR bacterial pneumonia

scientific article published on 17 December 2020

Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia

preprint

Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

scientific article

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

scientific article

Reagent contamination can critically impact sequence-based microbiome analyses

article

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota.

scientific article published on 12 February 2018

Respiratory Viral Infection Alters the Gut Microbiota by Inducing Inappetence

scientific article published on 18 February 2020

Sequencing the human microbiome in health and disease.

scientific article

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

scientific article

The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis

scientific article

Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador

scientific article

Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil

article

Ventilator-associated pneumonia: when is a pathogen not a pathogen?

scientific article published on 2 May 2017

List of works by Michael J Cox

A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease

A molecular comparison of microbial communities in bronchiectasis and cystic fibrosis

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

Airway Microbiota in Severe Asthma and Relationship to Asthma Severity and Phenotypes

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients

Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.

Author Correction: Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

Bacterial microbiota of the upper respiratory tract and childhood asthma

Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencing

Comparison of the upper and lower airway microbiota in children with chronic lung diseases

Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

Dysbiosis anticipating necrotizing enterocolitis in very premature infants

Efficacy of antimicrobial and anti-viral coated air filters to prevent the spread of airborne pathogens

Growing up with your airway microbiota: a risky business

Gut microbiota and protection from pneumococcal pneumonia

Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes

Improved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing ⬇️

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome

Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants

Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients

Longitudinal development of the airway microbiota in infants with cystic fibrosis

Multilocus characterization scheme for shiga toxin-encoding bacteriophages.

Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease.

Outside In: Sequencing the Lung Microbiome

Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring AMR bacterial pneumonia

Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia

Progression of whole-blood transcriptional signatures from interferon-induced to neutrophil-associated patterns in severe influenza

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Reagent contamination can critically impact sequence-based microbiome analyses

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota.

Respiratory Viral Infection Alters the Gut Microbiota by Inducing Inappetence

Sequencing the human microbiome in health and disease.

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism

The role of bacteria in the pathogenesis and progression of idiopathic pulmonary fibrosis

Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador

Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil

Ventilator-associated pneumonia: when is a pathogen not a pathogen?