List of works - Suresh Mathivanan

A compendium of potential biomarkers of pancreatic cancer.

scientific article

A curated compendium of phosphorylation motifs

scientific article (publication date: March 2007)

A novel community driven software for functional enrichment analysis of extracellular vesicles data.

scientific article

A novel mechanism of generating extracellular vesicles during apoptosis via a beads-on-a-string membrane structure

scientific article

An evaluation of human protein-protein interaction data in the public domain

scientific article

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets

scientific article

Arrestin-Domain Containing Protein 1 (Arrdc1) Regulates the Protein Cargo and Release of Extracellular Vesicles

scientific article published on 20 August 2018

Autotransporter adhesins in Escherichia coli pathogenesis.

scientific article published on 30 June 2017

Bioinformatics Tools for Extracellular Vesicles Research.

scientific article published in January 2017

Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth.

scientific article

Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues.

scientific article

Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma

scientific article

Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes

scientific article

Cortactin enhances exosome secretion without altering cargo.

scientific article published on July 2016

Deletion of intestinal Hdac3 remodels the lipidome of enterocytes and protects mice from diet-induced obesity

scientific article published on 22 November 2019

EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research.

scientific article published on February 2017

EVpedia: a community web portal for extracellular vesicles research

scientific article

Emerging role of extracellular vesicles in mediating cancer cachexia

scientific article published on 20 September 2018

ExoCarta 2012: database of exosomal proteins, RNA and lipids

scientific article

ExoCarta as a resource for exosomal research

scientific article published on 16 April 2012

ExoCarta: A Web-Based Compendium of Exosomal Cargo

scientific article published on October 2015

ExoCarta: A compendium of exosomal proteins and RNA

scientific article

Exosomes in bodily fluids are a highly stable resource of disease biomarkers

scientific article

Exosomes: proteomic insights and diagnostic potential

scientific article published on June 2009

Extending gene ontology in the context of extracellular RNA and vesicle communication

scientific article published on 12 April 2016

Extracellular Matrix and the Extracellular Environment

scientific article published on 01 December 2017

Extracellular Microvesicles: The Need for Internationally Recognised Nomenclature and Stringent Purification Criteria

Extracellular Vesicles from Neural Stem Cells Transfer IFN-γ via Ifngr1 to Activate Stat1 Signaling in Target Cells

scholarly article by Chiara Cossetti published in November 2014

Extracellular peptidases of the cereal pathogen Fusarium graminearum

scientific article

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

scientific article

Extracellular vesicles including exosomes are mediators of signal transduction: are they protective or pathogenic?

scientific article

Extracellular vesicles including exosomes in cross kingdom regulation: a viewpoint from plant-fungal interactions

scientific article published on 23 September 2015

Extracellular vesicles secreted by Saccharomyces cerevisiae are involved in cell wall remodelling

scientific article published on 09 August 2019

Focus on Extracellular Vesicles: Introducing the Next Small Big Thing

scientific article

FunRich: An open access standalone functional enrichment and interaction network analysis tool

scientific article

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

scholarly article

Human Protein Reference Database--2009 update

scientific article (publication date: 2009)

Human Proteinpedia enables sharing of human protein data

scientific article

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome

scientific article

Identifying mutated proteins secreted by colon cancer cell lines using mass spectrometry

scientific article

Inhibition of cathepsin proteases attenuates migration and sensitizes aggressive N-Myc amplified human neuroblastoma cells to doxorubicin.

scientific article published on May 2015

Insulin Mediated Activation of PI3K/Akt Signalling Pathway Modifies the Proteomic Cargo of Extracellular Vesicles.

scientific article published on 26 August 2017

Integrated Bioinformatics Analysis of the Publicly Available Protein Data Shows Evidence for 96% of the Human Proteome

article

Label-Based and Label-Free Strategies for Protein Quantitation.

scientific article published in January 2017

Minimal experimental requirements for definition of extracellular vesicles and their functions: a position statement from the International Society for Extracellular Vesicles

scientific article

Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

scientific article published on 23 November 2018

NetPath: a public resource of curated signal transduction pathways

scientific article

Network Tools for the Analysis of Proteomic Data

scientific article

Oral administration of bovine milk-derived extracellular vesicles induces senescence in the primary tumor but accelerates cancer metastasis

scientific article published on 24 June 2021

Plasma Proteome Database as a resource for proteomics research: 2014 update.

scientific article published on 03 December 2013

Powerful differential expression analysis incorporating network topology for next-generation sequencing data.

scientific article

Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.

scientific article published on 09 July 2014

Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components

scientific article published on May 2013

Proteomic Data Storage and Sharing.

scientific article

Proteomic Profiling of Exosomes Secreted by Breast Cancer Cells with Varying Metastatic Potential

scientific article published on 8 November 2017

Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations.

scientific article

Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature

scientific article

Proteomics profiling of Madin-Darby canine kidney plasma membranes reveals Wnt-5a involvement during oncogenic H-Ras/TGF-beta-mediated epithelial-mesenchymal transition

scientific article

Proteotypic Peptides and Their Applications

scientific article published on January 2017

Rapid and comprehensive 'shotgun' lipidome profiling of colorectal cancer cell derived exosomes

scientific article

Regulation of the divalent metal ion transporter via membrane budding.

scientific article published on 21 June 2016

Secreted tumor antigens - immune biomarkers for diagnosis and therapy.

scientific article

Sengers Syndrome-Associated Mitochondrial Acylglycerol Kinase Is a Subunit of the Human TIM22 Protein Import Complex.

scientific article published on 11 July 2017

Sulfisoxazole does not inhibit the secretion of small extracellular vesicles

publication published on 12 February 2021

Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database

article

The International Society for Extracellular Vesicles launches the first massive open online course on extracellular vesicles.

scientific article published on 16 December 2016

Ticket to a bubble ride: Cargo sorting into exosomes and extracellular vesicles

scientific article published on 26 February 2019

Tim29 is a novel subunit of the human TIM22 translocase and is involved in complex assembly and stability

scientific journal article

Triton X-114 phase separation in the isolation and purification of mouse liver microsomal membrane proteins

scientific article published on 25 January 2011

Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids. ⬇️

scientific article published on 10 December 2012

Unassigned MS/MS Spectra: Who Am I?

scientific article published on January 2017

Updating the MISEV minimal requirements for extracellular vesicle studies: building bridges to reproducibility.

scientific article

Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

scientific article published on 01 January 2019

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation

scientific article

List of works by Suresh Mathivanan

A compendium of potential biomarkers of pancreatic cancer.

A curated compendium of phosphorylation motifs

A novel community driven software for functional enrichment analysis of extracellular vesicles data.

A novel mechanism of generating extracellular vesicles during apoptosis via a beads-on-a-string membrane structure

An evaluation of human protein-protein interaction data in the public domain

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets

Arrestin-Domain Containing Protein 1 (Arrdc1) Regulates the Protein Cargo and Release of Extracellular Vesicles

Autotransporter adhesins in Escherichia coli pathogenesis.

Bioinformatics Tools for Extracellular Vesicles Research.

Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth.

Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues.

Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma

Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes

Cortactin enhances exosome secretion without altering cargo.

Deletion of intestinal Hdac3 remodels the lipidome of enterocytes and protects mice from diet-induced obesity

EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research.

EVpedia: a community web portal for extracellular vesicles research

Emerging role of extracellular vesicles in mediating cancer cachexia

ExoCarta 2012: database of exosomal proteins, RNA and lipids

ExoCarta as a resource for exosomal research

ExoCarta: A Web-Based Compendium of Exosomal Cargo

ExoCarta: A compendium of exosomal proteins and RNA

Exosomes in bodily fluids are a highly stable resource of disease biomarkers

Exosomes: proteomic insights and diagnostic potential

Extending gene ontology in the context of extracellular RNA and vesicle communication

Extracellular Matrix and the Extracellular Environment

Extracellular Microvesicles: The Need for Internationally Recognised Nomenclature and Stringent Purification Criteria

Extracellular Vesicles from Neural Stem Cells Transfer IFN-γ via Ifngr1 to Activate Stat1 Signaling in Target Cells

Extracellular peptidases of the cereal pathogen Fusarium graminearum

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

Extracellular vesicles including exosomes are mediators of signal transduction: are they protective or pathogenic?

Extracellular vesicles including exosomes in cross kingdom regulation: a viewpoint from plant-fungal interactions

Extracellular vesicles secreted by Saccharomyces cerevisiae are involved in cell wall remodelling

Focus on Extracellular Vesicles: Introducing the Next Small Big Thing

FunRich: An open access standalone functional enrichment and interaction network analysis tool

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Human Protein Reference Database--2009 update

Human Proteinpedia enables sharing of human protein data

Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome

Identifying mutated proteins secreted by colon cancer cell lines using mass spectrometry

Inhibition of cathepsin proteases attenuates migration and sensitizes aggressive N-Myc amplified human neuroblastoma cells to doxorubicin.

Insulin Mediated Activation of PI3K/Akt Signalling Pathway Modifies the Proteomic Cargo of Extracellular Vesicles.

Integrated Bioinformatics Analysis of the Publicly Available Protein Data Shows Evidence for 96% of the Human Proteome

Label-Based and Label-Free Strategies for Protein Quantitation.

Minimal experimental requirements for definition of extracellular vesicles and their functions: a position statement from the International Society for Extracellular Vesicles

Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

NetPath: a public resource of curated signal transduction pathways

Network Tools for the Analysis of Proteomic Data

Oral administration of bovine milk-derived extracellular vesicles induces senescence in the primary tumor but accelerates cancer metastasis

Plasma Proteome Database as a resource for proteomics research: 2014 update.

Powerful differential expression analysis incorporating network topology for next-generation sequencing data.

Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.

Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components

Proteomic Data Storage and Sharing.

Proteomic Profiling of Exosomes Secreted by Breast Cancer Cells with Varying Metastatic Potential

Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations.

Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature

Proteomics profiling of Madin-Darby canine kidney plasma membranes reveals Wnt-5a involvement during oncogenic H-Ras/TGF-beta-mediated epithelial-mesenchymal transition

Proteotypic Peptides and Their Applications

Rapid and comprehensive 'shotgun' lipidome profiling of colorectal cancer cell derived exosomes

Regulation of the divalent metal ion transporter via membrane budding.

Secreted tumor antigens - immune biomarkers for diagnosis and therapy.

Sengers Syndrome-Associated Mitochondrial Acylglycerol Kinase Is a Subunit of the Human TIM22 Protein Import Complex.

Sulfisoxazole does not inhibit the secretion of small extracellular vesicles

Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database

The International Society for Extracellular Vesicles launches the first massive open online course on extracellular vesicles.

Ticket to a bubble ride: Cargo sorting into exosomes and extracellular vesicles

Tim29 is a novel subunit of the human TIM22 translocase and is involved in complex assembly and stability

Triton X-114 phase separation in the isolation and purification of mouse liver microsomal membrane proteins

Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids. ⬇️

Unassigned MS/MS Spectra: Who Am I?

Updating the MISEV minimal requirements for extracellular vesicle studies: building bridges to reproducibility.

Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation