List of works - Ricardo Cavicchioli

17 Proteins from Psychrophiles

A chemically modified α-amylase with a molten-globule state has entropically driven enhanced thermal stability†

scientific article published on 09 August 2010

A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

scientific article

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.

scientific article

A novel approach for enhancing the catalytic efficiency of a protease at low temperature: reduction in substrate inhibition by chemical modification

scientific article published in July 2009

A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells

scientific article

A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii.

scientific article

A vision for a ‘microbcentric’ future

scientific article published on 2 April 2018

Acquisition of ethanol tolerance in yeast cells by heat shock

Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects

scientific article

An assessment of protein profiles from the marine oligotrophic ultramicrobacterium, Sphingomonas sp. strain RB2256

scientific article published on 01 July 1999

An integrative study of a meromictic lake ecosystem in Antarctica

scientific article

An online database for the detection of novel archaeal sequences in human ESTs

scientific article published on 15 April 2004

Analyzing the hydrophobic proteome of the antarctic archaeon Methanococcoides burtonii using differential solubility fractionation

scientific article published in February 2010

Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

scientific article

Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC–MS/MS

scientific article published on 07 January 2016

Archaea — timeline of the third domain ⬇️

scientific article published on December 6, 2010

Archaeal cold-adapted proteins: structural and evolutionary analysis of the elongation factor 2 proteins from psychrophilic, mesophilic and thermophilic methanogens

scientific article published in November 1998

Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics

scientific article

Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry

scientific article

Biotechnological uses of enzymes from psychrophiles ⬇️

scientific article published on March 24, 2011

Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256.

scientific article

Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer

scientific article

Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii

scientific article published on 7 April 2016

Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation

scientific article

Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.

scientific article

Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi

scientific article published on 20 February 2017

Cold-adapted archaea

scientific article

Cold-adapted enzymes.

scientific article

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

scientific article published on 10 September 2016

Corrigendum: Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii

scientific article published on 10 June 2016

Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis.

scientific article published in June 2004

Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics

article

Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function

scientific article published on 06 October 2016

Ecology and molecular targets of hypermutation in the global microbiome

scientific article published on 24 May 2021

Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by Metaproteomics

scientific article published on 18 March 2016

Effect of temperature on stability and activity of elongation factor 2 proteins from Antarctic and thermophilic methanogens.

scientific article

Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens

scientific article

Genomic variation and biogeography of Antarctic haloarchaea.

scientific article published on 20 June 2018

Global biogeography of SAR11 marine bacteria

scientific article

Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part I: the effect of growth temperature.

scientific article published in February 2010

Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part II: the effect of different methylated growth substrates.

scientific article published in February 2010

Glycerol metabolism of haloarchaea

scientific article

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

Identification and characterization of narQ, a second nitrate sensor for nitrate-dependent gene regulation in Escherichia coli

scientific article published in July 1992

Improved thermal stability and activity in the cold-adapted lipase B from Candida antarctica following chemical modification with oxidized polysaccharides

scientific article published on 6 July 2005

Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation

scientific article published on 31 May 2010

Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C).

scientific article published in September 2003

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

scientific article published on 09 August 2020

Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae

scientific article

Isolement et caractérisation de bactéries marines oligotrophes

scientific article published on 01 January 2007

Key microbial drivers in Antarctic aquatic environments

scientific article

Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: Insight into manganese peroxidase activation and lignin peroxidase inhibition.

scientific article

Life and applications of extremophiles.

scientific article published in August 2011

Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

scientific article published on 12 June 2021

Loss of heat-shock acquisition of thermotolerance in yeast is not correlated with loss of heat-shock proteins

scientific article published on 01 October 1986

Lost cold Antarctic deserts inferred from unusual sulfate formation and isotope signatures

scientific article

Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii

scientific article published in March 2000

Low-temperature extremophiles and their applications

scientific article

Marine metaproteomics: deciphering the microbial metabolic food web.

scientific article published on 11 April 2014

Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

scientific article

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

scientific article published on 25 April 2013

Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated Archaea: the role of ammonia oxidizers.

scientific article published in January 2007

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

scientific article published on 18 March 2010

Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data

scientific article

Microbial ecology of Antarctic aquatic systems

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

scientific article

Mitochondrial and cytoplasmic protein syntheses are not required for heat shock acquisition of ethanol and thermotolerance in yeast

scientific article published on 01 July 1984

Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi

scientific article

Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling

scientific article

On the concept of a psychrophile

scientific article published on 15 September 2015

Pathogenic archaea: do they exist?

scientific article

Physiological responses to starvation in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256.

scientific article published on May 2000

Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii

scientific article published in March 2005

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

scientific article published on 25 June 2013

Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.

scientific article

Proteomics of extremophiles.

scientific article published on 25 April 2011

Psychrophiles

scientific article

Remarkable resistance to UVB of the marine bacterium Photobacterium angustum explained by an unexpected role of photolyase.

scientific article published on 5 June 2009

Remarkably coherent population structure for a dominant Antarctic Chlorobium species

scientific article published on 26 November 2021

Role of disulfide bridges in the activity and stability of a cold-active alpha-amylase

scientific article

Role of lysine versus arginine in enzyme cold-adaptation: Modifying lysine to homo-arginine stabilizes the cold-adapted α-amylase from Pseudoalteramonas haloplanktis

scientific article published on 01 August 2006

Scientists' warning to humanity: microorganisms and climate change

scientific article published on 18 June 2019

Serpins in unicellular Eukarya, Archaea, and Bacteria: sequence analysis and evolution

scientific article published in October 2004

Shotgun redox proteomics: identification and quantitation of carbonylated proteins in the UVB-resistant marine bacterium, Photobacterium angustum S14

scientific article

Single TRAM domain RNA-binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii

scientific article

Specific growth rate plays a critical role in hydrogen peroxide resistance of the marine oligotrophic ultramicrobacterium sphingomonas alaskensis strain RB2256.

scientific article

Structural analysis of the elongation factor G protein from the low-temperature-adapted bacterium Arthrobacter globiformis SI55.

scientific article published in April 2000

Structure and function of cold shock proteins in archaea.

scientific article

Sucrose Metabolism in Haloarchaea: Reassessment Using Genomics, Proteomics, and Metagenomics

scientific article published on 06 March 2019

Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii

scientific article published on 08 November 2010

Terrestrial models for extraterrestrial life: methanogens and halophiles at Martian temperatures

article

The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA.

scientific article

The active site is the least stable structure in the unfolding pathway of a multidomain cold-adapted alpha-amylase

scientific article

The discovery of Antarctic RNA viruses: a new game changer

scientific article

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

scientific article

The genomic basis of trophic strategy in marine bacteria

scholarly article

The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics.

scientific article published on 10 July 2009

The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.

scientific article

The urgent need for microbiology literacy in society

scientific article published on 11 April 2019

Thermodynamic activation properties of elongation factor 2 (EF-2) proteins from psychrotolerant and thermophilic Archaea.

scientific article published in April 2002

Unexpected host dependency of Antarctic Nanohaloarchaeota

scientific article published on 28 June 2019

Versatile peroxidase degradation of humic substances: use of isothermal titration calorimetry to assess kinetics, and applications to industrial wastes

scientific article published on 11 March 2014

Virophage control of antarctic algal host-virus dynamics

scientific article

Virus-mediated archaeal hecatomb in the deep seafloor

scientific article

Viruses of haloarchaea

scientific article

List of works by Ricardo Cavicchioli

17 Proteins from Psychrophiles

A chemically modified α-amylase with a molten-globule state has entropically driven enhanced thermal stability†

A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.

A novel approach for enhancing the catalytic efficiency of a protease at low temperature: reduction in substrate inhibition by chemical modification

A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells

A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii.

A vision for a ‘microbcentric’ future

Acquisition of ethanol tolerance in yeast cells by heat shock

Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects

An assessment of protein profiles from the marine oligotrophic ultramicrobacterium, Sphingomonas sp. strain RB2256

An integrative study of a meromictic lake ecosystem in Antarctica

An online database for the detection of novel archaeal sequences in human ESTs

Analyzing the hydrophobic proteome of the antarctic archaeon Methanococcoides burtonii using differential solubility fractionation

Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC–MS/MS

Archaea — timeline of the third domain ⬇️

Archaeal cold-adapted proteins: structural and evolutionary analysis of the elongation factor 2 proteins from psychrophilic, mesophilic and thermophilic methanogens

Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics

Biology of the cold adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry

Biotechnological uses of enzymes from psychrophiles ⬇️

Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256.

Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer

Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii

Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation

Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT.

Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi

Cold-adapted archaea

Cold-adapted enzymes.

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Corrigendum: Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii

Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis.

Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics

Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function

Ecology and molecular targets of hypermutation in the global microbiome

Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by Metaproteomics

Effect of temperature on stability and activity of elongation factor 2 proteins from Antarctic and thermophilic methanogens.

Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens

Genomic variation and biogeography of Antarctic haloarchaea.

Global biogeography of SAR11 marine bacteria

Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part I: the effect of growth temperature.

Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part II: the effect of different methylated growth substrates.

Glycerol metabolism of haloarchaea

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

Identification and characterization of narQ, a second nitrate sensor for nitrate-dependent gene regulation in Escherichia coli

Improved thermal stability and activity in the cold-adapted lipase B from Candida antarctica following chemical modification with oxidized polysaccharides

Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation

Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C).

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae

Isolement et caractérisation de bactéries marines oligotrophes

Key microbial drivers in Antarctic aquatic environments

Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: Insight into manganese peroxidase activation and lignin peroxidase inhibition.

Life and applications of extremophiles.

Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

Loss of heat-shock acquisition of thermotolerance in yeast is not correlated with loss of heat-shock proteins

Lost cold Antarctic deserts inferred from unusual sulfate formation and isotope signatures

Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii

Low-temperature extremophiles and their applications

Marine metaproteomics: deciphering the microbial metabolic food web.

Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated Archaea: the role of ammonia oxidizers.

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data

Microbial ecology of Antarctic aquatic systems

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

Mitochondrial and cytoplasmic protein syntheses are not required for heat shock acquisition of ethanol and thermotolerance in yeast

Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi

Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling

On the concept of a psychrophile

Pathogenic archaea: do they exist?

Physiological responses to starvation in the marine oligotrophic ultramicrobacterium Sphingomonas sp. strain RB2256.

Predicted roles for hypothetical proteins in the low-temperature expressed proteome of the Antarctic archaeon Methanococcoides burtonii

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.

Proteomics of extremophiles.