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List of works by Boudewijn Lelieveldt

2D-3D shape reconstruction of the distal femur from stereo X-ray imaging using statistical shape models.

scientific article published on 4 May 2011

3-D active appearance models: segmentation of cardiac MR and ultrasound images

article

3D Model-Based Approach to Lung Registration and Prediction of Respiratory Cardiac Motion

scientific article published on 01 January 2005

A 3-D active shape model driven by fuzzy inference: application to cardiac CT and MR.

scientific article published in September 2008

A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 24 August 2020

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

scientific article published on 04 June 2021

A multiresolution image segmentation technique based on pyramidal segmentation and fuzzy clustering

scientific article published in January 2000

A structural equation model for imaging genetics using spatial transcriptomics

Accuracy of short-axis cardiac MRI automatically derived from scout acquisitions in free-breathing and breath-holding modes

scientific article published on 28 January 2005

Active Appearance–Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms

Additional diagnostic value of integrated analysis of cardiac CTA and SPECT MPI using the SMARTVis system in patients with suspected coronary artery disease

scientific article published on 12 December 2013

An Efficient Preconditioner for Stochastic Gradient Descent Optimization of Image Registration

scientific article published on 11 February 2019

An Integrated Automated Analysis Method for Quantifying Vessel Stenosis and Plaque Burden From Carotid MRI Images

article

An objective comparison of cell-tracking algorithms.

scientific article published on 30 October 2017

Analysis and compensation for the effect of the catheter position on image intensities in intravascular optical coherence tomography

scientific article published on 01 December 2016

Anatomical Modeling with Fuzzy Implicit Surface Templates: Application to Automated Localization of the Heart and Lungs in Thoracic MR Volumes

Anatomical model matching with fuzzy implicit surfaces for segmentation of thoracic volume scans

article

Approximated and User Steerable tSNE for Progressive Visual Analytics.

scientific article published on 19 May 2016

Articulated planar reformation for change visualization in small animal imaging

scientific article published in November 2010

Articulated whole-body atlases for small animal image analysis: construction and applications.

scientific article published on October 2011

Assessment of viscous energy loss and the association with three-dimensional vortex ring formation in left ventricular inflow: In vivo evaluation using four-dimensional flow MRI

scientific article

Atlas-based whole-body segmentation of mice from low-contrast Micro-CT data

scientific article

Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

scientific article published in March 2018

Automated Ischemic Lesion Segmentation in MRI Mouse Brain Data after Transient Middle Cerebral Artery Occlusion

scientific article

Automated Registration of Whole-Body Follow-Up MicroCT Data of Mice

article

Automated Short-Axis Cardiac Magnetic Resonance Image Acquisitions

scientific article published on 01 December 2004

Automated algorithm for reconstruction of the complete spine from multistation 7T MR data

scientific article

Automated bone volume and thickness measurements in small animal whole-body MicroCT data

scientific article

Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming

scientific article published in September 2006

Automated contour detection in cardiac MRI using active appearance models: the effect of the composition of the training set.

scientific article published in October 2007

Automated detection of regional wall motion abnormalities based on a statistical model applied to multislice short-axis cardiac MR images

scientific article

Automated extraction and labelling of the arterial tree from whole-body MRA data

scientific article

Automated left ventricular delineation in X-ray angiograms: a validation study

scientific article published in February 2009

Automated regional wall motion abnormality detection by combining rest and stress cardiac MRI: Correlation with contrast-enhanced MRI

Automated registration of multispectral MR vessel wall images of the carotid artery

scientific article published in December 2013

Automatic generic registration of mass spectrometry imaging data to histology using nonlinear stochastic embedding

scientific article

Automatic identification of coronary tree anatomy in coronary computed tomography angiography.

scientific article published on 24 June 2017

Automatic quantification and characterization of coronary atherosclerosis with computed tomography coronary angiography: cross-correlation with intravascular ultrasound virtual histology

scientific article published on 16 February 2013

Automatic quantification of bone marrow edema on MRI of the wrist in patients with early arthritis: A feasibility study

scientific article

Automatic registration of mass spectrometry imaging data sets to the Allen brain atlas

scientific article

Automatic segmentation and plaque characterization in atherosclerotic carotid artery MR images

scientific article published on 16 March 2004

Automatic segmentation of echocardiographic sequences by active appearance motion models

scientific article published in November 2002

Automatic vessel wall contour detection and quantification of wall thickness in in-vivo MR images of the human aorta.

scientific article published in September 2006

Brain transcriptome atlases: a computational perspective

scientific article published on December 2016

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome

scientific article

CT-based handling and analysis of preclinical multimodality imaging data of bone metastases.

scientific article

Cardiac MR perfusion image processing techniques: a survey.

scientific article published on 10 January 2012

Characterization and evaluation of the artemis camera for fluorescence-guided cancer surgery

scientific article published on June 2015

Comparative cellular analysis of motor cortex in human, marmoset and mouse

scientific article published on 06 October 2021

Comparative transcriptomics reveals human-specific cortical features

scientific article published on 12 October 2023

Comparison of Shape Regression Methods under Landmark Position Uncertainty

article

Computer-aided diagnosis via model-based shape analysis

article

Computer-aided diagnosis via model-based shape analysis: cardiac MR and echo

Conditional Shape Models for Cardiac Motion Estimation

Conserved cell types with divergent features in human versus mouse cortex

scientific article published in 2019 in Nature

CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis.

scientific article published on 29 August 2017

Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets

article published in 2016

Data-driven identification of prognostic tumor subpopulations using spatially mapped t-SNE of mass spectrometry imaging data

scientific article

Deep Recursive Embedding for High-Dimensional Data

scientific article published in 2022

DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks.

scientific article published on 29 August 2017

Deformation texture-based features for classification in Alzheimer's disease

Detection of Conversion from Mild Cognitive Impairment to Alzheimer's Disease Using Longitudinal Brain MRI.

scientific article published on 24 February 2017

EpCAM as multi-tumour target for near-infrared fluorescence guided surgery.

scientific article

Evaluation of a new method for automated detection of left ventricular boundaries in time series of magnetic resonance images using an Active Appearance Motion Model.

scientific article published in January 2004

Evaluation of automated statistical shape model based knee kinematics from biplane fluoroscopy.

scientific article published on 9 October 2013

Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration

scientific article published on 3 September 2015

Fast linear geodesic shape regression using coupled logdemons registration

article published in 2015

Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease

scientific article published on January 2013

Fully automated attenuation measurement and motion correction in FLIP image sequences

scientific article published on 13 October 2011

Fully automated motion correction in first-pass myocardial perfusion MR image sequences

scientific article published in November 2008

Fully automatic registration and segmentation of first-pass myocardial perfusion MR image sequences

scientific article published in November 2010

Fully-automatic left ventricular segmentation from long-axis cardiac cine MR scans

Fusion of CTA and XA data using 3D centerline registration for plaque visualization during coronary intervention

scholarly article published 18 March 2016

Guest Editorial Functional Imaging of the Heart

scientific article published on 01 November 2008

Helminth infections drive heterogeneity in human type 2 and regulatory cells

scientific article published on 01 January 2020

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

scientific article published on 12 May 2015

Hierarchical Stochastic Neighbor Embedding

Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI

scientific article published on 01 January 2013

Influence of positional and angular variation of automatically planned short-axis stacks on quantification of left ventricular dimensions and function with cardiovascular magnetic resonance

scientific article published on 01 December 2005

Information Processing In Medical Imaging 2007.

scientific article published in April 2008

Inter-station intensity standardization for whole-body MR data

scientific article

Interactive local super-resolution reconstruction of whole-body MRI mouse data: a pilot study with applications to bone and kidney metastases

scientific article

Joint Intensity Inhomogeneity Correction for Whole-Body MR Data

scientific article published on 01 January 2013

Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets.

scientific article

Model driven quantification of left ventricular function from sparse single-beat 3D echocardiography

scientific article published on 6 May 2010

Model-based alignment of Look-Locker MRI sequences for calibrated myocardical scar tissue quantification

Multistage hybrid active appearance model matching: segmentation of left and right ventricles in cardiac MR images

article

Multiview Active Appearance Models for Simultaneous Segmentation of Cardiac 2- and 4-Chamber Long-Axis Magnetic Resonance Images

scientific article published on 01 April 2005

Neuro-fuzzy systems for computer-aided myocardial viability assessment

scientific article published in December 2001

Noninvasive Detection of Metastases and Follicle Density in Ovarian Tissue Using Full-Field Optical Coherence Tomography

scientific article published on 16 May 2016

Operator induced variability in cardiovascular MR: left ventricular measurements and their reproducibility

scientific article published in January 2005

Optical advances in skeletal imaging applied to bone metastases.

scientific article published on 03 August 2010

Optical mammography using diffuse optical spectroscopy for monitoring tumor response to neoadjuvant chemotherapy in women with locally advanced breast cancer

scientific article published on 3 December 2014

Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 04 December 2020

Quantification of aortic annulus in computed tomography angiography: Validation of a fully automatic methodology

scientific article published on 26 April 2017

Quantification of diastolic vortex shape deformation in left ventricular filling from 4D flow MRI

Regression-based cardiac motion prediction from single-phase CTA.

scientific article

Repeatability of in vivo quantification of atherosclerotic carotid artery plaque components by supervised multispectral classification.

scientific article

Respiratory motion estimation in x-ray angiography for improved guidance during coronary interventions

scientific article published on 10 April 2015

Robust motion correction in the frequency domain of cardiac MR stress perfusion sequences

SPASM: a 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data.

scientific article published on 24 January 2006

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome

scientific article

Statistical coronary motion models for 2D+t/3D registration of X-ray coronary angiography and CTA.

scientific article published on 27 March 2013

Statistical shape model-based femur kinematics from biplane fluoroscopy.

scientific article

Super-resolution reconstruction of late gadolinium-enhanced MRI for improved myocardial scar assessment

scientific article

Time continuous tracking and segmentation of cardiovascular magnetic resonance images using multidimensional dynamic programming.

scientific article published in January 2006

Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

scientific article

Tissue characterization with depth-resolved attenuation coefficient and backscatter term in intravascular optical coherence tomography images

scientific article published in September 2017

Toward optical guidance during endoscopic ultrasound-guided fine needle aspirations of pancreatic masses using single fiber reflectance spectroscopy: a feasibility study

scientific article published in February 2017

Trends in Bioimaging and Signal Processing [In the Spotlight]

scholarly article by Jean-Christophe Olivio-Marin et al published November 2011 in IEEE: Signal Processing Magazine

Validation of full-field optical coherence tomography in distinguishing malignant and benign tissue in resected pancreatic cancer specimens

scientific article

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

scientific article published on 23 November 2017

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings

scientific article published on 16 October 2014

Vortex flow during early and late left ventricular filling in normal subjects: quantitative characterization using retrospectively-gated 4D flow cardiovascular magnetic resonance and three-dimensional vortex core analysis.

scientific article

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