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List of works by Stefania Bortoluzzi

A Comprehensive, High-Resolution Genomic Transcript Map of Human Skeletal Muscle ⬇️

scientific article published on August 1, 1998

A computational reconstruction of the adult human heart transcriptional profile.

scientific article

A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells

scientific article published on 22 April 2020

A multistep bioinformatic approach detects putative regulatory elements in gene promoters

scientific article

A novel germline variant in PIK3R1 results in SHORT syndrome associated with TAL/LMO T-cell Acute Lymphoblastic Leukemia

scientific article published on 16 September 2020

A survey of software tools for microRNA discovery and characterization using RNA-seq

scientific article

A-MADMAN: annotation-based microarray data meta-analysis tool

scientific article published on 29 June 2009

An integrative framework identifies alternative splicing events in colorectal cancer development.

scientific article published on 19 October 2013

Analysis of LGI1 promoter sequence, PDYN and GABBR1 polymorphisms in sporadic and familial lateral temporal lobe epilepsy.

scientific article

CRAFT: a bioinformatics software for custom prediction of circular RNA functions

scientific article published on 01 March 2022

Characterization of C14orf4, a novel intronless human gene containing a polyglutamine repeat, mapped to the ARVD1 critical region

scientific article

Chromosomal localization of four MAPK signaling cascade genes: MEK1, MEK3, MEK4 and MEKK5

scientific article

CirComPara: A Multi-Method Comparative Bioinformatics Pipeline to Detect and Study circRNAs from RNA-seq Data.

scientific article

CircRNAs Dysregulated in Juvenile Myelomonocytic Leukemia: CircMCTP1 Stands Out

scientific article published on 01 January 2020

Circular RNA differential expression in blood cell populations and exploration of circRNA deregulation in pediatric acute lymphoblastic leukemia

scientific article published on 11 October 2019

Computational reconstruction of the human skeletal muscle secretome

scientific article published on March 2006

Control of the Na+/Ca2+ exchanger 3 promoter by cyclic adenosine monophosphate and Ca2+ in differentiating neurons.

scientific article published on January 2003

Critical analysis of transcriptional and post-transcriptional regulatory networks in multiple myeloma

scientific article published in January 2010

DHPLC analysis of the MECP2 gene in Italian Rett patients

scientific article published in August 2001

Defining the gene expression signature of rhabdomyosarcoma by meta-analysis.

scientific article published on 7 November 2006

Detecting differentially expressed genes in multiple tag sampling experiments: comparative evaluation of statistical tests

article

Detecting seeded motifs in DNA sequences

scientific article

Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma

scientific article

Differential expression of genes coding for ribosomal proteins in different human tissues.

scientific article

Expanding the repertoire of miRNAs and miRNA-offset RNAs expressed in multiple myeloma by small RNA deep sequencing

scientific article published on 19 February 2019

Genome evolution in the cold: Antarctic icefish muscle transcriptome reveals selective duplications increasing mitochondrial function

scientific article (publication date: 2013)

Genomic expression during human myelopoiesis

scientific article

H-ferritin-regulated microRNAs modulate gene expression in K562 cells

scientific article published on 27 March 2015

Human miRNome profiling in colorectal cancer and liver metastasis development

scientific article published on 27 June 2014

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

scientific article published on 15 January 2003

Identification of differentially expressed small RNAs and prediction of target genes in Italian Large White pigs with divergent backfat deposition.

scientific article published on 23 March 2018

Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma.

scientific article published in December 2009

Impact of host genes and strand selection on miRNA and miRNA* expression.

scientific article

Impact of microRNAs on regulatory networks and pathways in human colorectal carcinogenesis and development of metastasis.

scientific article

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

scientific article published on 13 January 2010

Lack of Viral Load Within Chronic Lymphoproliferative Disorder of Natural Killer Cells: What Is Outside the Leukemic Clone?

publication published on 01 January 2020

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

scientific article published on 19 May 2010

MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).

scientific article

MiR&moRe2: A Bioinformatics Tool to Characterize microRNAs and microRNA-Offset RNAs from Small RNA-Seq Data

scientific article published on 04 March 2020

MicroRNA expression in HTLV-1 infection and pathogenesis

MicroRNA–offset RNAs (moRNAs): by-product spectators or functional players?

scientific article published on 21 June 2011

Motif discovery in promoters of genes co-localized and co-expressed during myeloid cells differentiation

scientific article published on 05 December 2008

Novel definition files for human GeneChips based on GeneAnnot

scientific article

Novel genes, possibly relevant for molecular diagnosis or therapy of human rhabdomyosarcoma, detected by genomic expression profiling.

scientific article published in March 2005

REEF: searching REgionally Enriched Features in genomes

scientific article published on 16 October 2006

Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics

scientific article

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel

scientific article

Silencing of miR-182 is associated with modulation of tumorigenesis through apoptosis induction in an experimental model of colorectal cancer

scientific article published on 20 August 2019

Small RNAs in Circulating Exosomes of Cancer Patients: A Minireview.

scientific article

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources

scientific article

The gene promoter of human Na+/Ca2+ exchanger isoform 3 (SLC8A3) is controlled by cAMP and calcium.

scientific article published on November 2002

The human SLC8A3 gene and the tissue-specific Na+/Ca2+ exchanger 3 isoforms

scientific journal article

The preliminary transcript map of a human skeletal muscle.

scientific article published on September 1997

Towards an in silico analysis of transcription patterns

scientific article published on 01 March 1999

mRNA-Seq and microarray development for the Grooved Carpet shell clam, Ruditapes decussatus: a functional approach to unravel host-parasite interaction. ⬇️

scientific article

miRNA-mRNA integrative analysis in primary myelofibrosis CD34+ cells: role of miR-155/JARID2 axis in abnormal megakaryopoiesis

scientific article

miRNome of Italian Large White pig subcutaneous fat tissue: new miRNAs, isomiRs and moRNAs

article

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