List of works - Alvaro Ortega

Analytical ultracentrifugation studies of oligomerization and DNA-binding of TtCarH, a Thermus thermophilus coenzyme B12-based photosensory regulator.

scientific article published on 20 March 2013

Analytical ultracentrifugation studies of phage phi29 protein p6 binding to DNA

scientific article published on 30 November 2008

Brownian dynamics simulation of analytical ultracentrifugation experiments

scientific article

Calculation of hydrodynamic properties of small nucleic acids from their atomic structure

scientific article

Calculation of the solution properties of flexible macromolecules: methods and applications

scientific article published on 16 April 2003

Characterization of low molecular mass thermosensitive diblock copolymers and their self-assembly by means of analytical ultracentrifugation

Characterization of the control catabolite protein of gluconeogenic genes repressor by fluorescence cross-correlation spectroscopy and other biophysical approaches

scientific article published on 25 July 2008

Chemoreceptors with C-terminal pentapeptides for CheR and CheB binding are abundant in bacteria that maintain host interactions

scientific article published on 16 July 2020

Efficient, accurate calculation of rotational diffusion and NMR relaxation of globular proteins from atomic-level structures and approximate hydrodynamic calculations

scientific article published on 01 September 2005

Equivalent radii and ratios of radii from solution properties as indicators of macromolecular conformation, shape, and flexibility.

scientific article published on 24 July 2007

FAK dimerization controls its kinase-dependent functions at focal adhesions

scientific article

Fructose-1,6-bisphosphate acts both as an inducer and as a structural cofactor of the central glycolytic genes repressor (CggR).

scientific article published on 4 December 2007

Functional Annotation of Bacterial Signal Transduction Systems: Progress and Challenges

scientific article published on 26 November 2018

Global fit and structure optimization of flexible and rigid macromolecules and nanoparticles from analytical ultracentrifugation and other dilute solution properties.

scientific article published on 14 December 2010

Identification of a Chemoreceptor in Pseudomonas aeruginosa That Specifically Mediates Chemotaxis Toward α-Ketoglutarate.

scientific article published on 29 November 2016

Identification of ligands for bacterial sensor proteins

scientific article

Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles

scientific article published on 01 February 2007

Influence of ionic strength on the flexibility of alginate studied by size exclusion chromatography

scientific article published on 27 November 2013

Intrinsic viscosity of bead models for macromolecules and nanoparticles.

scientific article published on 6 February 2009

MULTIHYDRO and MONTEHYDRO: Conformational search and Monte Carlo calculation of solution properties of rigid or flexible bead models

scientific article published on 13 April 2005

McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes.

scientific article published on 14 October 2015

Metabolic Value Chemoattractants Are Preferentially Recognized at Broad Ligand Range Chemoreceptor of Pseudomonas putida KT2440.

scientific article published on 31 May 2017

Methods and tools for the prediction of hydrodynamic coefficients and other solution properties of flexible macromolecules in solution. A tutorial minireview.

scientific article published on July 2010

Molecular flexibility of citrus pectins by combined sedimentation and viscosity analysis

article

Molecular flexibility of methylcelluloses of differing degree of substitution by combined sedimentation and viscosity analysis

scientific article published on 01 December 2008

Multi-scale calculation and global-fit analysis of hydrodynamic properties of biological macromolecules: determination of the overall conformation of antibody IgG molecules

scientific article published on 18 December 2008

Multiple signals modulate the activity of the complex sensor kinase TodS.

scientific article

Paralogous chemoreceptors mediate chemotaxis towards protein amino acids and the non-protein amino acid gamma-aminobutyrate (GABA)

scientific journal article

Prediction of Hydrodynamic and Other Solution Properties of Partially Disordered Proteins with a Simple, Coarse-Grained Model.

scientific article published on 4 February 2013

Purification and characterization of Pseudomonas aeruginosa LasR expressed in acyl-homoserine lactone free Escherichia coli cultures.

scientific article

SIMUFLEX: Algorithms and Tools for Simulation of the Conformation and Dynamics of Flexible Molecules and Nanoparticles in Dilute Solution.

scientific article published in October 2009

Sensory Repertoire of Bacterial Chemoreceptors

scientific article published on 25 October 2017

So different and still so similar: The plant compound rosmarinic acid mimics bacterial homoserine lactone quorum sensing signals

scientific article

Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida

scientific article published on 11 May 2018

The HBM domain: introducing bimodularity to bacterial sensing

scientific article

The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN

scientific article published on 19 February 2019

The activity of the C4-dicarboxylic acid chemoreceptor of Pseudomonas aeruginosa is controlled by chemoattractants and antagonists.

scientific article published in February 2018

Two different mechanisms mediate chemotaxis to inorganic phosphate in Pseudomonas aeruginosa.

scientific article published on 29 June 2016

List of works by Alvaro Ortega

Analytical ultracentrifugation studies of oligomerization and DNA-binding of TtCarH, a Thermus thermophilus coenzyme B12-based photosensory regulator.

Analytical ultracentrifugation studies of phage phi29 protein p6 binding to DNA

Brownian dynamics simulation of analytical ultracentrifugation experiments

Calculation of hydrodynamic properties of small nucleic acids from their atomic structure

Calculation of the solution properties of flexible macromolecules: methods and applications

Characterization of low molecular mass thermosensitive diblock copolymers and their self-assembly by means of analytical ultracentrifugation

Characterization of the control catabolite protein of gluconeogenic genes repressor by fluorescence cross-correlation spectroscopy and other biophysical approaches

Chemoreceptors with C-terminal pentapeptides for CheR and CheB binding are abundant in bacteria that maintain host interactions

Efficient, accurate calculation of rotational diffusion and NMR relaxation of globular proteins from atomic-level structures and approximate hydrodynamic calculations

Equivalent radii and ratios of radii from solution properties as indicators of macromolecular conformation, shape, and flexibility.

FAK dimerization controls its kinase-dependent functions at focal adhesions

Fructose-1,6-bisphosphate acts both as an inducer and as a structural cofactor of the central glycolytic genes repressor (CggR).

Functional Annotation of Bacterial Signal Transduction Systems: Progress and Challenges

Global fit and structure optimization of flexible and rigid macromolecules and nanoparticles from analytical ultracentrifugation and other dilute solution properties.

Identification of a Chemoreceptor in Pseudomonas aeruginosa That Specifically Mediates Chemotaxis Toward α-Ketoglutarate.

Identification of ligands for bacterial sensor proteins

Improved calculation of rotational diffusion and intrinsic viscosity of bead models for macromolecules and nanoparticles

Influence of ionic strength on the flexibility of alginate studied by size exclusion chromatography

Intrinsic viscosity of bead models for macromolecules and nanoparticles.

MULTIHYDRO and MONTEHYDRO: Conformational search and Monte Carlo calculation of solution properties of rigid or flexible bead models

McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes.

Metabolic Value Chemoattractants Are Preferentially Recognized at Broad Ligand Range Chemoreceptor of Pseudomonas putida KT2440.

Methods and tools for the prediction of hydrodynamic coefficients and other solution properties of flexible macromolecules in solution. A tutorial minireview.

Molecular flexibility of citrus pectins by combined sedimentation and viscosity analysis

Molecular flexibility of methylcelluloses of differing degree of substitution by combined sedimentation and viscosity analysis

Multi-scale calculation and global-fit analysis of hydrodynamic properties of biological macromolecules: determination of the overall conformation of antibody IgG molecules

Multiple signals modulate the activity of the complex sensor kinase TodS.

Paralogous chemoreceptors mediate chemotaxis towards protein amino acids and the non-protein amino acid gamma-aminobutyrate (GABA)

Prediction of Hydrodynamic and Other Solution Properties of Partially Disordered Proteins with a Simple, Coarse-Grained Model.

Purification and characterization of Pseudomonas aeruginosa LasR expressed in acyl-homoserine lactone free Escherichia coli cultures.

SIMUFLEX: Algorithms and Tools for Simulation of the Conformation and Dynamics of Flexible Molecules and Nanoparticles in Dilute Solution.

Sensory Repertoire of Bacterial Chemoreceptors

So different and still so similar: The plant compound rosmarinic acid mimics bacterial homoserine lactone quorum sensing signals

Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida

The HBM domain: introducing bimodularity to bacterial sensing

The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN

The activity of the C4-dicarboxylic acid chemoreceptor of Pseudomonas aeruginosa is controlled by chemoattractants and antagonists.

Two different mechanisms mediate chemotaxis to inorganic phosphate in Pseudomonas aeruginosa.