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List of works by Matthew Loose

5-hydroxymethyl-cytosine enrichment of non-committed cells is not a universal feature of vertebrate development.

scientific article published in April 2012

A bistable genetic switch which does not require high co-operativity at the promoter: a two-timescale model for the PU.1-GATA-1 interaction

scientific article published on 29 January 2009

A conserved mechanism for vertebrate mesoderm specification in urodele amphibians and mammals

scientific article published on 13 April 2010

A disruptive sequencer meets disruptive publishing

scientific article

A genetic regulatory network for Xenopus mesendoderm formation

scientific article published in July 2004

Acquisition of germ plasm accelerates vertebrate evolution

scientific article published on April 2014

AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts

scientific article published on 9 November 2015

Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection

scientific article

Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome

scientific article published on 01 January 2020

Bistability in a model of mesoderm and anterior mesendoderm specification in Xenopus laevis.

scientific article published on 31 May 2009

Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity

scientific article

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

scientific article (publication date: 24 May 2017)

Evolutionary modelling of feed forward loops in gene regulatory networks.

scientific article published on 5 October 2007

Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression

scientific article published on 8 June 2011

Finding the Needle: Targeted Nanopore Sequencing and CRISPR-Cas9

scientific article published on 01 August 2018

Gene regulatory networks in the genomics era.

scientific article published on 3 June 2013

Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification

scientific article

Germ layer induction in ESC--following the vertebrate roadmap

scientific article published in June 2007

Global genetic regulatory networks controlling hematopoietic cell fates

scientific article

Inference, validation, and dynamic modeling of transcription networks in multipotent hematopoietic cells

scientific article published on 18 April 2007

Kinetochore assembly and heterochromatin formation occur autonomously in Schizosaccharomyces pombe

scientific article published on 21 January 2014

Lineage segregation, pluripotency and X-chromosome inactivation in the pig pre-gastrulation embryo

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

scientific article

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.

scientific article published on 31 May 2017

Multicellular Mathematical Modelling of Mesendoderm Formation in Amphibians

scientific article

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

scientific article (publication date: 9 January 2017)

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

scientific article

Multiscale stochastic modelling of gene expression

scientific article published on 7 October 2011

Nanopore native RNA sequencing of a human poly(A) transcriptome

scientific article published on 18 November 2019

Nanopore sequencing and assembly of a human genome with ultra-long reads

article

Nanopore sequencing and assembly of a human genome with ultra-long reads.

scientific article published on 29 January 2018

Pluripotency and X chromosome dynamics revealed in pig pre-gastrulating embryos by single cell analysis

scientific article published in Nature Communications

Publisher Correction: Virtual Genome Walking across the 32 Gb Ambystoma mexicanum genome; assembling gene models and intronic sequence.

scientific article

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

scientific article published on 30 November 2020

Real time selective sequencing using nanopore technology

Real-time selective sequencing using nanopore technology

scientific article

Reply to 'Errors in long-read assemblies can critically affect protein prediction'

scientific article published on 01 February 2019

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

scientific article

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples

scholarly article published 19 December 2016

Sarbecoviruses of British Horseshoe Bats; Sequence Variation and Epidemiology

Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals.

scientific article published on February 2012

Stochastic specification of primordial germ cells from mesoderm precursors in axolotl embryos.

scientific article

Telomere-to-telomere assembly of a complete human X chromosome

scientific article published on 14 July 2020

The evolutionary influence of binding site organisation on gene regulatory networks

scientific article

The genome sequence of the European golden eagle, <i>Aquila chrysaetos chrysaetos</i> Linnaeus 1758

publication published on 14 May 2021

The potential impact of nanopore sequencing on human genetics

scientific article published in October 2017

The roles of GATA-4, -5 and -6 in vertebrate heart development

scientific article

Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression

scientific article published on 25 January 2013

Transcriptional networks regulating hematopoietic cell fate decisions

scientific article published on July 2007

Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells.

scientific article published on 29 May 2014

Two different network topologies yield bistability in models of mesoderm and anterior mesendoderm specification in amphibians

scientific article

Virtual Genome Walking across the 32 Gb Ambystoma mexicanum genome; assembling gene models and intronic sequence

scientific article published on 12 January 2018

Wave pinning and spatial patterning in a mathematical model of Antivin/Lefty-Nodal signalling

scientific article published on 16 October 2012

Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files

foxc1a and foxc1b differentially regulate angiogenesis from arteries and veins by modulating Vascular Endothelial Growth Factor signalling

myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks

scientific article

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