List of works - Jarkko Salojärvi

A Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced Stomatal Closure.

scientific article

Apoplastic and chloroplastic redox signaling networks in plant stress responses.

scientific article published on 8 January 2013

Apoplastic reactive oxygen species transiently decrease auxin signaling and cause stress-induced morphogenic response in Arabidopsis

scientific article published on 17 October 2011

Arabidopsis MLO2 is a negative regulator of sensitivity to extracellular ROS.

scientific article published on 15 January 2018

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

scientific article published on 15 February 2019

Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs

scientific article published in Scientific Reports

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

scientific article

Author Correction: Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs

scientific article published in Scientific Reports

Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis

scientific article published in 2024

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

scientific article

Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm).

scientific article

Differences in growth and gas exchange between southern and northern provenances of silver birch (Betula pendula Roth) in northern Europe

scientific article published on 01 February 2020

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

scientific article published on 2 October 2015

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

scientific article

Effects of bowel cleansing on the intestinal microbiota

scientific article published on 19 December 2014

Extraction and Curation of Gene Models for Plant Receptor Kinases for Phylogenetic Analysis.

scientific article

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults

scientific article

Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome

scientific article

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

scientific article

Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.

scientific article published on 30 April 2013

High-throughput sequencing data and the impact of plant gene annotation quality

scientific article published on 01 February 2019

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

scientific article

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

scientific article published on 12 December 2015

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

scientific article published in October 2017

Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome.

scientific article published on 20 March 2013

Integration of photosynthesis, development and stress as an opportunity for plant biology

scientific article

Interaction of methyl viologen-induced chloroplast and mitochondrial signalling in Arabidopsis

scientific article published on 06 February 2019

Intestinal microbiota in healthy U.S. young children and adults--a high throughput microarray analysis.

scientific article

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress

scientific article (publication date: July 2015)

Mechanistic insights into the evolution of DUF26-containing proteins in land plants

article

Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation

scientific article

Navigating through metaproteomics data: a logbook of database searching

scientific article published on 16 March 2015

Ozone-triggered rapid stomatal response involves the production of reactive oxygen species, and is controlled by SLAC1 and OST1.

scientific article published in February 2010

PLETHORA gradient formation mechanism separates auxin responses

scientific article

PROTEIN PHOSPHATASE 2A-B'γ Controls Botrytis cinerea Resistance and Developmental Leaf Senescence

scientific article published on 28 October 2019

Photosystem II Repair and Plant Immunity: Lessons Learned from Arabidopsis Mutant Lacking the THYLAKOID LUMEN PROTEIN 18.3.

scientific article published on 31 March 2016

Self organization of a massive document collection.

scientific article published in January 2000

Subunits B'γ and B'ζ of protein phosphatase 2A regulate photo-oxidative stress responses and growth in Arabidopsis thaliana

scientific article published on 27 May 2015

Targeted retrieval of gene expression measurements using regulatory models

scientific article published on 27 June 2012

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress

scientific article published on 12 February 2014

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

scientific article

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.

scientific article

The adult intestinal core microbiota is determined by analysis depth and health status.

scientific article

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

scientific article published on 06 August 2019

The receptor-like pseudokinase GHR1 is required for stomatal closure

scientific article published on 25 October 2018

Tipping elements in the human intestinal ecosystem

scientific article

Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark

scientific article published on 07 March 2019

Transcriptional regulation of the CRK/DUF26 group of receptor-like protein kinases by ozone and plant hormones in Arabidopsis

scientific article

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.

scientific article

Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

scientific article published on 03 January 2022

Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.

scientific article published on 22 June 2009

List of works by Jarkko Salojärvi

A Dominant Mutation in the HT1 Kinase Uncovers Roles of MAP Kinases and GHR1 in CO2-Induced Stomatal Closure.

Apoplastic and chloroplastic redox signaling networks in plant stress responses.

Apoplastic reactive oxygen species transiently decrease auxin signaling and cause stress-induced morphogenic response in Arabidopsis

Arabidopsis MLO2 is a negative regulator of sensitivity to extracellular ROS.

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs

Associations between the human intestinal microbiota, Lactobacillus rhamnosus GG and serum lipids indicated by integrated analysis of high-throughput profiling data

Author Correction: Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs

Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis

Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions

Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm).

Differences in growth and gas exchange between southern and northern provenances of silver birch (Betula pendula Roth) in northern Europe

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

Durable coexistence of donor and recipient strains after fecal microbiota transplantation.

Effects of bowel cleansing on the intestinal microbiota

Extraction and Curation of Gene Models for Plant Receptor Kinases for Phylogenetic Analysis.

Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults

Faecal microbiota composition and host-microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.

High-throughput sequencing data and the impact of plant gene annotation quality

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database

Improvement of Insulin Sensitivity after Lean Donor Feces in Metabolic Syndrome Is Driven by Baseline Intestinal Microbiota Composition.

Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome.

Integration of photosynthesis, development and stress as an opportunity for plant biology

Interaction of methyl viologen-induced chloroplast and mitochondrial signalling in Arabidopsis

Intestinal microbiota in healthy U.S. young children and adults--a high throughput microarray analysis.

Large-Scale Phenomics Identifies Primary and Fine-Tuning Roles for CRKs in Responses Related to Oxidative Stress

Mechanistic insights into the evolution of DUF26-containing proteins in land plants

Microbial shifts and signatures of long-term remission in ulcerative colitis after faecal microbiota transplantation

Navigating through metaproteomics data: a logbook of database searching

Ozone-triggered rapid stomatal response involves the production of reactive oxygen species, and is controlled by SLAC1 and OST1.

PLETHORA gradient formation mechanism separates auxin responses

PROTEIN PHOSPHATASE 2A-B'γ Controls Botrytis cinerea Resistance and Developmental Leaf Senescence

Photosystem II Repair and Plant Immunity: Lessons Learned from Arabidopsis Mutant Lacking the THYLAKOID LUMEN PROTEIN 18.3.

Self organization of a massive document collection.

Subunits B'γ and B'ζ of protein phosphatase 2A regulate photo-oxidative stress responses and growth in Arabidopsis thaliana

Targeted retrieval of gene expression measurements using regulatory models

The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.

The adult intestinal core microbiota is determined by analysis depth and health status.

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

The receptor-like pseudokinase GHR1 is required for stomatal closure

Tipping elements in the human intestinal ecosystem

Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark

Transcriptional regulation of the CRK/DUF26 group of receptor-like protein kinases by ozone and plant hormones in Arabidopsis

Transcriptomics and functional genomics of ROS-induced cell death regulation by RADICAL-INDUCED CELL DEATH1.

Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.