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List of works by Joanna Polanska

2014 POSTER Serum proteome mass spectrometry analyses for identification of novel diagnostic biomarkers in breast cancer patients

314 Osteopontin as a Potential Serum Marker in Early Breast Cancer-Preliminary Results

40 EASD Annual Meeting of the European Association for the Study of Diabetes : Munich, Germany, 5-9 September 2004 ⬇️

article

A Novel Divisive iK-Means Algorithm with Region-Driven Feature Selection as a Tool for Automated Detection of Tumour Heterogeneity in MALDI IMS Experiments

article published in 2016

A simple model of linkage disequilibrium and genetic drift in human genomic SNPs: importance of demography and SNP age.

scientific article published in January 2005

ATP4A autoimmunity and Helicobacter pylori infection in children with type 1 diabetes

scientific article published in September 2014

ATP4A autoimmunity in pediatric patients with type 1 diabetes and its relationship to blood count, iron metabolism, and vitamin B12.

scientific article

Activation maps of convolutional neural networks as a tool for brain degeneration tracking in early diagnosis of dementia in Parkinson's disease based on magnetic resonance imaging

scientific article published on 31 March 2021

Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition ⬇️

scientific article published on March 20, 2013

Age at diagnosis and gender modify the risk of 9q22 and 14q13 polymorphisms for papillary thyroid carcinoma.

scientific article published in January 2017

An Efficient Algorithm for Microarray Probes Re-annotation

article published in 2014

An analysis of the prevalence of thyroid autoantibodies: thyroid peroxidase antibodies (ATA) and thyroglobulin antibodies (ATG) in children with newly diagnosed diabetes mellitus type 1 during 2000–2004 in the Upper Silesia region, Poland

article

Analysing Intercellular Communication in Astrocytic Networks Using "Astral"

scientific article published in 2021

Application of Bayesian networks for inferring cause-effect relations from gene expression profiles of cancer versus normal cells

scientific article published on 27 March 2007

Are Radiosensitive and Regular Response Cells Homogeneous in Their Correlations Between Copy Number State and Surviving Fraction After Irradiation?

scientific article published in 2018

Are we confident that final-year medical students know at least basics about diabetes?: A preliminary report from the multicenter, survey-based Diabetes Know-Me study

scientific article published in September 2021

Association between age at diagnosis of Graves' disease and variants in genes involved in immune response

scientific article published on 27 March 2013

Automatische Tumorsegmentierung mit spärlich annotierter Lernbasis

Bacterial strains colonizing subcutaneous catheters of personal insulin pumps.

scientific article published in January 2007

BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm

article

Birthweight and the risk of childhood-onset type 1 diabetes: a meta-analysis of observational studies using individual patient data

scientific article

Blood pressure disturbances and endothelial dysfunction markers in children and adolescents with type 1 diabetes

scientific article published on 08 September 2014

Bone status in adolescents and young adults with type 1 diabetes: a 10-year longitudinal study

scientific article published on 30 December 2020

Bone status in adolescents with type 1 diabetes.

scientific article published on 9 May 2010

Breast Cancer Heterogeneity Investigation: Multiple k-Means Clustering Approach

scientific article published in October 2019

Bulky DNA adducts in human sperm: relationship with fertility, semen quality, smoking, and environmental factors

scientific article published in May 2003

Bystander effects induced by medium from irradiated cells: similar transcriptome responses in irradiated and bystander K562 cells.

scientific article published in May 2010

Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

scientific article

Can We Detect T Cell Receptors from Long-Read RNA-Seq Data?

scientific article published in 2022

Can an Integrative SNP Approach Substitute Standard Identification in Comprehensive Case/Control Analyses?

scientific article published on 17 August 2018

Classification of Thyroid Tumors Based on Mass Spectrometry Imaging of Tissue Microarrays; a Single-Pixel Approach

scientific article published on 31 August 2020

Combining CDKN1A gene expression and genome-wide SNPs in a twin cohort to gain insight into the heritability of individual radiosensitivity

article

Comparative Analysis of MicroRNA-Target Gene Interaction Prediction Algorithms Based on Integrated P-Value Calculation

scientific article published on 20 September 2017

Comparison of Algorithms for Profile-Based Alignment of Low Resolution MALDI-ToF Spectra

scholarly article by Michal Marczyk et al published 2014 in Advances in Intelligent Systems and Computing

Comparison of Batch Effect Removal Methods for High Dimensional Mass Cytometry Data

scientific article published in 2022

Comparison of peptide cancer signatures identified by mass spectrometry in serum of patients with head and neck, lung and colorectal cancers: Association with tumor progression

scientific article published on 05 September 2011

Comprehensive Analysis of MILE Gene Expression Data Set Advances Discovery of Leukaemia Type and Subtype Biomarkers.

scientific article

Corrigendum to “Blood pressure disturbances and endothelial dysfunction markers in children and adolescents with type 1 diabetes” [Atherosclerosis 237 (2014) 129–134]

scholarly article published in Atherosclerosis

DALSA: Domain Adaptation for Supervised Learning From Sparsely Annotated MR Images

scientific article published on 30 July 2015

Deep Data Analysis of a Large Microarray Collection for Leukemia Biomarker Identification

Detection of molecular signatures of oral squamous cell carcinoma and normal epithelium - application of a novel methodology for unsupervised segmentation of imaging mass spectrometry data

scientific article

Discrimination of normal oral mucosa from oral cancer by mass spectrometry imaging of proteins and lipids

scientific article published on 03 November 2018

Discrimination of papillary thyroid cancer from non-cancerous thyroid tissue based on lipid profiling by mass spectrometry imaging

scientific article published on 01 January 2018

Does social-economical transformation influence the incidence of type 1 diabetes mellitus? A Polish example

scientific article published in June 2008

EP-1817: Radiotherapy-related changes in serum proteome patterns of head and neck cancer patients

scholarly article by P. Widlak et al published 2014 in Radiotherapy and Oncology

Early Detection of Malignant Transformation in Resected WHO II Low-Grade Glioma Using Diffusion Tensor-Derived Quantitative Measures

scientific article

Efficient Algorithm for Microarray Probes Re-annotation

Epidemiology of type 1 diabetes among Silesian children aged 0–14 years, 1989–2005

scientific article published on 31 January 2009

Erratum: Cuceu, C., et al. Independent Mechanisms Lead to Genomic Instability in Hodgkin Lymphoma: Microsatellite or Chromosomal Instability. Cancers 2018, 10, 233

scientific article published on 30 May 2019

Favourable outcomes in patients with early-stage non-small-cell lung cancer operated on by video-assisted thoracoscopic surgery: a propensity score-matched analysis

scientific article published on 14 March 2018

GaMRed-Adaptive Filtering of High-Throughput Biological Data

scientific article published on 23 July 2018

Gaussian mixture decomposition in the analysis of MALDI-TOF spectra

article published in 2011

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms

scientific article published on 01 December 2019

Germline DNA Retention in Murine and Human Rearranged T Cell Receptor Gene Coding Joints: Alternative Recombination Signal Sequences and V(D)J Recombinase Errors

scientific article published on 08 November 2019

HLA Status in Patients with Chronic Spontaneous Urticaria

scientific article published on 18 June 2010

Heart irradiation reduces microvascular density and accumulation of HSPA1 in mice.

scientific article

Helicobacter pylori infection in type 1 diabetes children and adolescents using 13C urea breath test

scientific article published in January 2014

High levels of bulky DNA adducts in human sperm correlate with impaired fertility.

scientific article published in January 2003

How to Compare Various Clustering Outcomes? Metrices to Investigate Breast Cancer Patient Subpopulations Based on Proteomic Profiles

scientific article published in 2022

Identification of serum proteome signatures of locally advanced and metastatic gastric cancer: a pilot study

scientific article published on 17 September 2015

Identification of two novel mutations in human acute myeloid leukemia cases

scientific article published on 14 October 2020

Improving peak detection by Gaussian mixture modeling of mass spectral signal

scientific article published in September 2017

Incidence of type 1 diabetes among Polish children ages 0-14 years from 1989-2012.

scientific article published on 8 November 2014

Increased plasma concentration of 4-pyridone-3-carboxamide-1-ß-D-ribonucleoside (4PYR) in lung cancer. Preliminary studies

scientific article published on 16 April 2019

Independent Mechanisms Lead to Genomic Instability in Hodgkin Lymphoma: Microsatellite or Chromosomal Instability

Influence of Polymorphisms in DNA Repair GenesXPD, XRCC1andMGMTon DNA Damage Induced by Gamma Radiation and its Repair in LymphocytesIn Vitro

article

Influence of genetic background and oxidative stress response on risk of mandibular osteoradionecrosis after radiotherapy of head and neck cancer

Initializing the EM Algorithm for Univariate Gaussian, Multi-Component, Heteroscedastic Mixture Models by Dynamic Programming Partitions

Integrative multiomics study for validation of mechanisms in radiation-induced ischemic heart disease in Mayak workers

scientific article published in PLoS ONE

Interaction of HLA-DRB1 alleles with CTLA-4 in the predisposition to Graves' disease: the impact of DRB1*07

Investigation for Genetic Signature of Radiosensitivity – Data Analysis

Ionizing radiation affects the composition of the proteome of extracellular vesicles released by head-and-neck cancer cells in vitro

scientific article published on 01 May 2019

Is the Identification of SNP-miRNA Interactions Supporting the Prediction of Human Lymphocyte Transcriptional Radiation Responses?

article

Is the association between TNF-alpha-308 A allele and DMT1 independent of HLA-DRB1, DQB1 alleles?

scientific article

Kras mutations and PU.1 promoter methylation are new pathways in murine radiation-induced AML

scientific article published on 24 October 2019

Least Squares Estimators of Peptide Species Concentrations Based on Gaussian Mixture Decompositions of Protein Mass Spectra

article by Andrzej Polanski et al published 2015 in Springer Proceedings in Mathematics & Statistics

Liver regeneration following portal blood arterialization and splenectomy in acute hepatic failure.

scientific article published in July 2007

Low-dose radiation accelerates aging of the T-cell receptor repertoire in CBA/Ca mice.

scientific article

Lung cancer survival and comorbidities in lung cancer screening participants of the Gdańsk screening cohort

scientific article published on 01 December 2019

Machine learning techniques combined with dose profiles indicate radiation response biomarkers

scientific article published on 01 April 2019

Markers of Anemia in Children with Type 1 Diabetes.

scientific article

Mass spectrometry-based analysis of therapy-related changes in serum proteome patterns of patients with early-stage breast cancer.

scientific article

Mass spectrometry-based serum proteome pattern analysis in molecular diagnostics of early stage breast cancer

scientific article published on 13 July 2009

Maternal age at delivery and order of birth are risk factors for type 1 diabetes mellitus in Upper Silesia, Poland.

scientific article

Mathematical Modelling and Effect Size Analysis in Support of Searching for the Proteomic Signature of Radiotherapy Toxicity

scientific article published in October 2019

May Gender Have an Impact on Methylation Profile and Survival Prognosis in Acute Myeloid Leukemia?

scientific article published on 28 August 2021

MiMSeg - an algorithm for automated detection of tumor tissue on NMR apparent diffusion coefficient maps

Mixture Model Based Efficient Method for Magnetic Resonance Spectra Quantification

Modeling of Imaging Mass Spectrometry Data and Testing by Permutation for Biomarkers Discovery in Tissues

Molecular Heterogeneity of Papillary Thyroid Cancer: Comparison of Primary Tumors and Synchronous Metastases in Regional Lymph Nodes by Mass Spectrometry Imaging.

scientific article

Molecular Profiling for Predictors of Radiosensitivity in Patients with Breast or Head-and-Neck Cancer

scientific article published on 22 March 2020

Molecular profiles of thyroid cancer subtypes: Classification based on features of tissue revealed by mass spectrometry imaging.

scientific article published on 16 October 2016

Multicenter cross-sectional analysis of values of glycated haemoglobin (HbA1c) in Polish children and adolescents with long-term type 1 diabetes in Poland: PolPeDiab study group

scientific article published in January 2012

Multidimensional Feature Selection and Interaction Mining with Decision Tree Based Ensemble Methods

Multigene P-value Integration Based on SNPs Investigation for Seeking Radiosensitivity Signatures

Multiparametrical diffusion weighted imaging for the detection of anaplastic transformation of low-grade gliomas

Non-dipping and arterial hypertension depend on clinical factors rather than on genetic variability of ACE and RGS2 genes in patients with type 1 diabetes

scientific article

Novel Method of Identifying DNA Methylation Fingerprint of Acute Myeloid Leukaemia

Novel TG-FGFR1 and TRIM33-NTRK1 transcript fusions in papillary thyroid carcinoma

scientific article published on 18 February 2019

OC-0265: Whole body response to radiation in head and neck and prostate cancer patient; the serum proteome comparative analysis

scholarly article by M. Pietrowska et al published April 2015 in Radiotherapy and Oncology

Overweight--problem in pediatric patients. Part I. Obesity as a risk factor for metabolic disturbances

scientific article published in January 2001

Panel of serum metabolites discriminates cancer patients and healthy participants of lung cancer screening - a pilot study.

scientific article published on 12 August 2017

Partial-Body Irradiation in Patients with Prostate Cancer Treated with IMRT Has Little Effect on the Composition of Serum Proteome.

scientific article published on 30 June 2015

Patients with type 1 diabetes transition from pediatric to adult care in Poland—an example from Silesia

article

Potential clinical application of serum proteome mass spectrometry analyses in breast cancer patients diagnosis and management

Potential of Serum Proteome Patterns Analysis by MALDI-TOF Mass Spectrometry for Prediction of Acute Radiation Injury Response in Head and Neck Cancers Patients

Preliminary study for a fully automated pre-gating method for high-dimensional mass cytometry data

scientific article published on 25 October 2021

Prevalence of diabetes in Poland: a combined analysis of national databases

article

Pro-death signaling of cytoprotective heat shock factor 1: upregulation of NOXA leading to apoptosis in heat-sensitive cells.

scientific article

Prognostic value of 5-microRNA based signature in T2-T3N0 colon cancer

scientific article published on 02 August 2016

Prospective Open-Label, Single-Arm, Single-Center Follow-Up Study of the Application of the Advanced Hybrid Closed Loop System in Well-Controlled Children and Adolescents with Type 1 Diabetes

scientific article published in November 2022

Prospective assessment of continuous subcutaneous insulin infusion therapy in young children with type 1 diabetes

scientific article published on 18 June 2009

Quantifying Spatial Heterogeneity of Tumor-Infiltrating Lymphocytes to Predict Survival of Individual Cancer Patients

scientific article published on 7 July 2022

Quantitative ultrasound bone measurements in pre-pubertal children with type 1 diabetes

scientific article

Radiation Therapy-Induced Changes in Serum Lipidome of Head and Neck Cancer Patients

Radiation Therapy-Related Changes in Serum Proteome Patterns Are Affected by Medium Doses of Radiation Delivered to Large Volumes of Normal Tissue

Radiation Therapy–Related Changes in Serum Proteome and Lipidome Are Primarily Associated With a Type of Acute Toxicity: Comparison of Radiation-Induced Effects in Patients Treated Because of Head and Neck Cancer or Prostate Cancer

article

Radiation-induced DNA damage and its repair in lymphocytes of patients with head and neck cancer and healthy donors

scientific article published on 01 May 2002

Radiation-induced changes in levels of selected proteins in peripheral blood serum of breast cancer patients as a potential triage biodosimeter for large-scale radiological emergencies

scientific article published on December 2014

Radiation-induced changes in serum lipidome of head and neck cancer patients

scientific article

Radiation-related Changes in Serum Proteome Profiles Detected by Mass Spectrometry in Blood of Patients Treated with Radiotherapy Due to Larynx Cancer

Radiation-related changes in serum proteome profiles detected by mass spectrometry in blood of patients treated with radiotherapy due to larynx cancer.

scientific article

Radiomic-Based Lung Nodule Classification in Low-Dose Computed Tomography

scientific article published in 2022

Radiomics and artificial intelligence in lung cancer screening

scientific article published in February 2021

Radiotherapy-related changes in serum proteome patterns of head and neck cancer patients; the effect of low and medium doses of radiation delivered to large volumes of normal tissue

scientific article

Ranking metrics in gene set enrichment analysis: do they matter?

scientific article

Rapid increase in the incidence of type 1 diabetes in Polish children from 1989 to 2004, and predictions for 2010 to 2025.

scientific article

Reasons for the discontinuation of therapy of personal insulin pump in children with type 1 diabetes.

scientific article

Region-Specific Methylation Profiling in Acute Myeloid Leukemia

scientific article

Relationships between acute reactions to radiotherapy in head and neck cancer patients and parameters of radiation-induced DNA damage and repair in their lymphocytes

scientific article

Remission phase in children diagnosed with type 1 diabetes in years 2012 to 2013 in Silesia, Poland: An observational study

article

Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis

article

Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform

scientific article published on 23 July 2020

Screening Support System Based on Patient Survey Data—Case Study on Classification of Initial, Locally Collected COVID-19 Data

scientific article published on 15 November 2021

Seeking genetic signature of radiosensitivity--a novel method for data analysis in case of small sample sizes

scientific article

Seeking the factors predisposing to local skin inflammatory state development in children with type 1 diabetes (T1DM) treated with continuous subcutaneous insulin infusion (CSII).

scientific article published in March 2007

Sensitivity, Specificity and Prioritization of Gene Set Analysis When Applying Different Ranking Metrics

article

Serum Proteome Signature of Radiation Response: Upregulation of Inflammation-Related Factors and Downregulation of Apolipoproteins and Coagulation Factors in Cancer Patients Treated With Radiation Therapy--A Pilot Study.

scientific article published on 07 April 2015

Serum lipid profile discriminates patients with early lung cancer from healthy controls

scientific article published in August 2017

Serum mass profile signature as a biomarker of early lung cancer.

scientific article published on 16 June 2016

Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry

scientific article published on 31 July 2015

Sources of high variance between probe signals in Affymetrix short oligonucleotide microarrays

scientific article published on 31 December 2013

Stage I non-small-cell lung cancer: long-term results of lobectomy versus sublobar resection from the Polish National Lung Cancer Registry.

scientific article published on 11 April 2017

Statistical Integration of p-values for Enhancing Discovery of Radiotoxicity Gene Signatures

article

Strategies for optimizing the phase correction algorithms in Nuclear Magnetic Resonance spectroscopy

scientific article published on 13 August 2015

Symptom-based early-stage differentiation between SARS-CoV-2 versus other respiratory tract infections-Upper Silesia pilot study

scientific article published on 30 June 2021

Systemic Effects of Radiotherapy and Concurrent Chemo-Radiotherapy in Head and Neck Cancer Patients-Comparison of Serum Metabolome Profiles

scientific article published on 07 February 2020

Systemic modulation of stress and immune parameters in patients treated for prostate adenocarcinoma by intensity-modulated radiation therapy or stereotactic ablative body radiotherapy

scientific article published on 09 June 2020

The rate of improvement in metabolic control in children with diabetes mellitus type 1 on insulin glargine depends on age.

scientific article published in November 2007

The role of selected metalloproteinases in cheiroarthropathy in children with type 1 diabetes - a pilotage study

scientific article published on 16 January 2012

Therapy-Related Changes in the Serum Proteome Patterns of Early Stage Breast Cancer Patients with Different Outcomes.

scientific article published in January 2017

Tissue fixed with formalin and processed without paraffin embedding is suitable for imaging of both peptides and lipids by MALDI-IMS

scientific article published on 25 May 2016

Tocilizumab Improves the Prognosis of COVID-19 in Patients with High IL-6

scientific article published on 9 April 2021

Transcriptomic and proteomic analysis of mouse radiation-induced acute myeloid leukaemia (AML).

scientific article published on 26 May 2016

Updated 24-year trend of Type 1 diabetes incidence in children in Poland reveals a sinusoidal pattern and sustained increase

scientific article

Weakly Supervised Learning with Positive and Unlabeled Data for Automatic Brain Tumor Segmentation

scientific article published in 2022

Überwachtes Lernen zur Prädiktion von Tumorwachstum

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