List of works - Benjamin Roche

A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic

scientific article published on 26 July 2021

Absence of detection of highly pathogenic H5N1 in migratory waterfowl in southern France in 2005-2006.

scientific article published on 21 May 2007

Adaptive evolution and environmental durability jointly structure phylodynamic patterns in avian influenza viruses

scientific article

An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses ⬇️

scientific article published on March 30, 2011

Animal behaviour and cancer

article published in 2015

Applying ecological and evolutionary theory to cancer: a long and winding road ⬇️

scientific article published on 16 November 2012

Bad luck and cancer: Does evolution spin the wheel of fortune?

scientific article published on 20 March 2015

Brain cancer mortality rates increase with Toxoplasma gondii seroprevalence in France

scientific article published on 25 January 2012

Can Peto's paradox be used as the null hypothesis to identify the role of evolution in natural resistance to cancer? A critical review

scientific article

Cancer and life-history traits: lessons from host-parasite interactions

scientific article published on 18 February 2016

Cancer: a missing link in ecosystem functioning?

scientific article

Cancer: an emergent property of disturbed resource-rich environments? Ecology meets personalized medicine

scientific article published on 26 March 2015

Cholera outbreak in Senegal in 2005: was climate a factor?

scientific article

Combining Natural Language Processing and Metabarcoding to Reveal Pathogen-Environment Associations

Combining natural language processing and metabarcoding to reveal pathogen-environment associations

scientific article published on 07 April 2021

Consequences of insecticide resistance on malaria transmission.

scientific article published on 7 September 2017

Deoxyuridine triphosphate incorporation during somatic hypermutation of mouse VkOx genes after immunization with phenyloxazolone.

scientific article published on 22 September 2010

Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases.

scientific article published in June 2017

Disentangling complex parasite interactions: Protection against cerebral malaria by one helminth species is jeopardized by co-infection with another.

scientific article published on 10 May 2018

Do cell-autonomous and non-cell-autonomous effects drive the structure of tumor ecosystems?

scientific article published on February 2016

Does host receptivity or host exposure drives dynamics of infectious diseases? The case of West Nile Virus in wild birds.

scientific article published on 17 April 2015

Does the impact of biodiversity differ between emerging and endemic pathogens? The need to separate the concepts of hazard and risk.

scientific article

Does the weather play a role in the spread of pandemic influenza? A study of H1N1pdm09 infections in France during 2009-2010.

scientific article

Ecological and evolutionary approaches are essential to understand better the epidemics of avian influenza

scientific article published in April 2015

Economic inequality caused by feedbacks between poverty and the dynamics of a rare tropical disease: the case of Buruli ulcer in sub-Saharan Africa

scientific article published in November 2015

Ecosystem dynamics, biological diversity and emerging infectious diseases.

scientific article

Ectopic expression of AID in a non-B cell line triggers A:T and G:C point mutations in non-replicating episomal vectors

scientific article

Effect of hawk-dove game on the dynamics of two competing species.

scientific article published on 8 June 2014

Environmental transmission of Mycobacterium ulcerans drives dynamics of Buruli ulcer in endemic regions of Cameroon

scientific article

Environmental transmission scrambles coexistence patterns of avian influenza viruses ⬇️

scientific article published on March 29, 2010

Evidence for carry-over effects of predator exposure on pathogen transmission potential

scientific article published in December 2015

Evolutionary perspective of cancer: myth, metaphors, and reality

scientific article published on 27 May 2015

Exploiting host compensatory responses: the ‘must’ of manipulation?

article

Host Alternation Is Necessary to Maintain the Genome Stability of Rift Valley Fever Virus ⬇️

scientific article published on May 24, 2011

Host manipulation by cancer cells: Expectations, facts, and therapeutic implications

scientific article published on 5 February 2016

How community ecology can improve our understanding of cholera dynamics.

scientific article

Identifying the Achilles' heel of multi-host pathogens: The concept of keystone "host" species illustrated by Mycobacterium ulcerans transmission

scientific article

Imported chikungunya cases in an area newly colonised by Aedes albopictus: mathematical assessment of the best public health strategy.

scientific article

Interactions between immune challenges and cancer cells proliferation: timing does matter!

scientific article published on 17 August 2016

Interdisciplinarity and Infectious Diseases: An Ebola Case Study

scientific article published on 6 August 2015

KENDRICK: A Domain Specific Language and platform for mathematical epidemiological modelling

scholarly article published January 2015

Larval nutritional stress affects vector life history traits and human malaria transmission.

scientific article

Linking community and disease ecology: the impact of biodiversity on pathogen transmission

scientific article

Macroecology of birds potentially susceptible to West Nile virus

scientific article published on 01 December 2018

Making the best of a bad situation: host partial resistance and bypass of behavioral manipulation by parasites?

scientific article published on 10 June 2015

Malaria continues to select for sickle cell trait in Central Africa

scientific article published on 4 May 2015

Malignancies and High Birth Weight in Human: Which Cancers Could Result from Antagonistic Pleiotropy?

scholarly article published 2012

Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space

scientific article

Might Interspecific Interactions between Pathogens Drive Host Evolution? The Case of Plasmodium Species and Duffy-Negativity in Human Populations

scientific article published on 17 October 2016

Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission

scientific article

Mycobacterium ulcerans ecological dynamics and its association with freshwater ecosystems and aquatic communities: results from a 12-month environmental survey in Cameroon

scientific article

Natural resistance to cancers: a Darwinian hypothesis to explain Peto's paradox

scientific article

No evidence for ape Plasmodium infections in humans in Gabon

scientific article published on 3 June 2015

Optimal strategies for quarantine stopping in France. General expected patterns of strategies focusing on contact between age groups

scientific article published on 25 April 2020

Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations

scientific article published on 22 November 2012

Plant-Mediated Effects on Mosquito Capacity to Transmit Human Malaria.

scientific article

RNA interference is essential for cellular quiescence

scientific article published on 13 October 2016

RNA-induced initiation of transcriptional silencing (RITS) complex structure and function

scientific article published on 18 June 2019

Structure in the variability of the basic reproductive number (R0) for Zika epidemics in the Pacific islands

scientific article (publication date: 29 November 2016)

The Impact of Community Organization on Vector-Borne Pathogens ⬇️

scientific article published on November 27, 2012

The Spread of Aedes albopictus in Metropolitan France: Contribution of Environmental Drivers and Human Activities and Predictions for a Near Future

scientific article

The alternate role of direct and environmental transmission in fungal infectious disease in wildlife: threats for biodiversity conservation

scientific article

The cold European winter of 2005-2006 assisted the spread and persistence of H5N1 influenza virus in wild birds

scientific article

The consequences of reservoir host eradication on disease epidemiology in animal communities

scientific article

The curse of the Pharaoh revisited: evolutionary bi-stability in environmentally transmitted pathogens ⬇️

scientific article published on April 17, 2011

The guardians of inherited oncogenic vulnerabilities.

scientific article published on 31 October 2015

The impact of lockdown strategies targeting age groups on the burden of COVID-19 in France

scientific article published on 24 November 2020

The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries?

scientific article

The values and risks of an Intergovernmental Panel for One Health to strengthen pandemic prevention, preparedness, and response

scientific article published in 2023

Third International Biannual Evolution and Cancer Conference (Evolutionary Trade-offs and Clinical Consequences) Meeting report. San Francisco, CA, USA. 10-13 December 2015

scientific article

Transmissible cancers in mammals and bivalves: How many examples are there?: Predictions indicate widespread occurrence

scientific article published on 18 November 2020

Viral factors in influenza pandemic risk assessment.

scientific article

Was the COVID-19 pandemic avoidable? A call for a "solution-oriented" approach in pathogen evolutionary ecology to prevent future outbreaks

scientific article published on 31 August 2020

Water-borne transmission drives avian influenza dynamics in wild birds: the case of the 2005-2006 epidemics in the Camargue area

scientific article published on 18 April 2009

List of works by Benjamin Roche

A mechanistic and data-driven reconstruction of the time-varying reproduction number: Application to the COVID-19 epidemic

Absence of detection of highly pathogenic H5N1 in migratory waterfowl in southern France in 2005-2006.

Adaptive evolution and environmental durability jointly structure phylodynamic patterns in avian influenza viruses

An Agent-Based Model to study the epidemiological and evolutionary dynamics of Influenza viruses ⬇️

Animal behaviour and cancer

Applying ecological and evolutionary theory to cancer: a long and winding road ⬇️

Bad luck and cancer: Does evolution spin the wheel of fortune?

Brain cancer mortality rates increase with Toxoplasma gondii seroprevalence in France

Can Peto's paradox be used as the null hypothesis to identify the role of evolution in natural resistance to cancer? A critical review

Cancer and life-history traits: lessons from host-parasite interactions

Cancer: a missing link in ecosystem functioning?

Cancer: an emergent property of disturbed resource-rich environments? Ecology meets personalized medicine

Cholera outbreak in Senegal in 2005: was climate a factor?

Combining Natural Language Processing and Metabarcoding to Reveal Pathogen-Environment Associations

Combining natural language processing and metabarcoding to reveal pathogen-environment associations

Consequences of insecticide resistance on malaria transmission.

Deoxyuridine triphosphate incorporation during somatic hypermutation of mouse VkOx genes after immunization with phenyloxazolone.

Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases.

Disentangling complex parasite interactions: Protection against cerebral malaria by one helminth species is jeopardized by co-infection with another.

Do cell-autonomous and non-cell-autonomous effects drive the structure of tumor ecosystems?

Does host receptivity or host exposure drives dynamics of infectious diseases? The case of West Nile Virus in wild birds.

Does the impact of biodiversity differ between emerging and endemic pathogens? The need to separate the concepts of hazard and risk.

Does the weather play a role in the spread of pandemic influenza? A study of H1N1pdm09 infections in France during 2009-2010.

Ecological and evolutionary approaches are essential to understand better the epidemics of avian influenza

Economic inequality caused by feedbacks between poverty and the dynamics of a rare tropical disease: the case of Buruli ulcer in sub-Saharan Africa

Ecosystem dynamics, biological diversity and emerging infectious diseases.

Ectopic expression of AID in a non-B cell line triggers A:T and G:C point mutations in non-replicating episomal vectors

Effect of hawk-dove game on the dynamics of two competing species.

Environmental transmission of Mycobacterium ulcerans drives dynamics of Buruli ulcer in endemic regions of Cameroon

Environmental transmission scrambles coexistence patterns of avian influenza viruses ⬇️

Evidence for carry-over effects of predator exposure on pathogen transmission potential

Evolutionary perspective of cancer: myth, metaphors, and reality

Exploiting host compensatory responses: the ‘must’ of manipulation?

Host Alternation Is Necessary to Maintain the Genome Stability of Rift Valley Fever Virus ⬇️

Host manipulation by cancer cells: Expectations, facts, and therapeutic implications

How community ecology can improve our understanding of cholera dynamics.

Identifying the Achilles' heel of multi-host pathogens: The concept of keystone "host" species illustrated by Mycobacterium ulcerans transmission

Imported chikungunya cases in an area newly colonised by Aedes albopictus: mathematical assessment of the best public health strategy.

Interactions between immune challenges and cancer cells proliferation: timing does matter!

Interdisciplinarity and Infectious Diseases: An Ebola Case Study

KENDRICK: A Domain Specific Language and platform for mathematical epidemiological modelling

Larval nutritional stress affects vector life history traits and human malaria transmission.

Linking community and disease ecology: the impact of biodiversity on pathogen transmission

Macroecology of birds potentially susceptible to West Nile virus

Making the best of a bad situation: host partial resistance and bypass of behavioral manipulation by parasites?

Malaria continues to select for sickle cell trait in Central Africa

Malignancies and High Birth Weight in Human: Which Cancers Could Result from Antagonistic Pleiotropy?

Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space

Might Interspecific Interactions between Pathogens Drive Host Evolution? The Case of Plasmodium Species and Duffy-Negativity in Human Populations

Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission

Mycobacterium ulcerans ecological dynamics and its association with freshwater ecosystems and aquatic communities: results from a 12-month environmental survey in Cameroon

Natural resistance to cancers: a Darwinian hypothesis to explain Peto's paradox

No evidence for ape Plasmodium infections in humans in Gabon

Optimal strategies for quarantine stopping in France. General expected patterns of strategies focusing on contact between age groups

Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations

Plant-Mediated Effects on Mosquito Capacity to Transmit Human Malaria.

RNA interference is essential for cellular quiescence

RNA-induced initiation of transcriptional silencing (RITS) complex structure and function

Structure in the variability of the basic reproductive number (R0) for Zika epidemics in the Pacific islands

The Impact of Community Organization on Vector-Borne Pathogens ⬇️

The Spread of Aedes albopictus in Metropolitan France: Contribution of Environmental Drivers and Human Activities and Predictions for a Near Future

The alternate role of direct and environmental transmission in fungal infectious disease in wildlife: threats for biodiversity conservation

The cold European winter of 2005-2006 assisted the spread and persistence of H5N1 influenza virus in wild birds

The consequences of reservoir host eradication on disease epidemiology in animal communities

The curse of the Pharaoh revisited: evolutionary bi-stability in environmentally transmitted pathogens ⬇️

The guardians of inherited oncogenic vulnerabilities.

The impact of lockdown strategies targeting age groups on the burden of COVID-19 in France

The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries?

The values and risks of an Intergovernmental Panel for One Health to strengthen pandemic prevention, preparedness, and response

Third International Biannual Evolution and Cancer Conference (Evolutionary Trade-offs and Clinical Consequences) Meeting report. San Francisco, CA, USA. 10-13 December 2015

Transmissible cancers in mammals and bivalves: How many examples are there?: Predictions indicate widespread occurrence

Viral factors in influenza pandemic risk assessment.

Was the COVID-19 pandemic avoidable? A call for a "solution-oriented" approach in pathogen evolutionary ecology to prevent future outbreaks

Water-borne transmission drives avian influenza dynamics in wild birds: the case of the 2005-2006 epidemics in the Camargue area