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List of works by Thomas J Hardcastle

Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA

scientific article

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

scientific article published on 22 September 2013

Chromosomal instability determines taxane response

scholarly article

DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis

scientific article published on October 2015

Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution

scientific article

Generalized empirical Bayesian methods for discovery of differential data in high-throughput biology

scientific article published on October 2015

Genomic analysis of genetic heterogeneity and evolution in high-grade serous ovarian carcinoma.

scientific article

Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori

scientific article published on 20 April 2011

High-throughput sequencing of cytosine methylation in plant DNA

scientific article published on 07 June 2013

Identifying small interfering RNA loci from high-throughput sequencing data

scientific article

Metastable differentially methylated regions within Arabidopsis inbred populations are associated with modified expression of non-coding transcripts

scientific article

Methods for discovering genomic loci exhibiting complex patterns of differential methylation

scientific article published on 18 September 2017

Mobile small RNAs regulate genome-wide DNA methylation

scientific article published on 19 January 2016

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes

scientific article

Sex Chromosome Dosage Compensation in Heliconius Butterflies: Global yet Still Incomplete?

scientific article

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

scientific article

The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci

scientific article published on 19 February 2010

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

scientific article

Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration.

scientific article published on 13 February 2018

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

scientific article

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