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List of works by Peter Stockley

A Simple, RNA-Mediated Allosteric Switch Controls the Pathway to Formation of a T=3 Viral Capsid

scientific article published on 15 March 2007

A biaryl peptide crosslink in a MetJ peptide model confers cooperative, nonspecific binding to DNA that ablates both repressor binding and in vitro transcription

scientific article

A high-resolution structure of the DNA-binding domain of AhrC, the arginine repressor/activator protein fromBacillus subtilis

scientific article

A modelling paradigm for RNA virus assembly ⬇️

scientific article published on 02 August 2018

A new paradigm for the roles of the genome in ssRNA viruses

scientific article published in June 2013

A nucleosome-like particle containing an octamer of the arginine-rich histones H3 and H4 ⬇️

scientific article published on March 1, 1979

A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence ⬇️

scientific article published on February 19, 2013

An Intracellular Model of Hepatitis B Viral Infection: An In Silico Platform for Comparing Therapeutic Strategies

scientific article published on 23 December 2020

An improved western blotting technique effectively reduces background

scientific article published on August 2002

Aptamers come of age - at last

scientific article published on August 2006

Assessing the causes and consequences of co-polymerization in amyloid formation ⬇️

scientific article

Asymmetric double ring-opening of a C(2h)-symmetric bis-epoxide: improved enantiomeric excess of the product through enantioselective desymmetrisation and 'proof-reading' steps

scientific article published on 23 May 2005

Asymmetric genome organization in an RNA virus revealed via graph-theoretical analysis of tomographic data ⬇️

scientific article (publication date: March 2015)

Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid ⬇️

scientific article published on January 2016

Broadly Neutralizing Bovine Antibodies: Highly Effective New Tools against Evasive Pathogens?

scientific article published on 22 April 2020

Building a viral capsid in the presence of genomic RNA.

scientific article published on 25 February 2013

Calorimetric studies of the energetics of protein-DNA interactions in the E. coli methionine repressor (MetJ) system

scientific article published on 01 July 1994

Characterization of RNA aptamers that disrupt the RUNX1-CBFbeta/DNA complex

scientific article published on 09 September 2009

Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein

scientific article

Construction and crystal structure of recombinant STNV capsids

scientific article

Crystal structure of an RNA bacteriophage coat protein–operator complex

scientific article published in Nature

Crystal structures of MS2 capsids with mutations in the subunit FG loop

scientific article

Crystal structures of MS2 coat protein mutants in complex with wild-type RNA operator fragments

scientific article

Crystal structures of a series of RNA aptamers complexed to the same protein target

scientific article

Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements.

scientific article

Degenerate RNA packaging signals in the genome of Satellite Tobacco Necrosis Virus: implications for the assembly of a T=1 capsid

scientific article published on 3 August 2011

Delivery of antisense oligonucleotides to leukemia cells by RNA bacteriophage capsids

scientific article published on March 2005

Design, synthesis and in vitro evaluation of novel bivalent S-adenosylmethionine analogues

scientific article published on 11 November 2011

Determining the topology of virus assembly intermediates using ion mobility spectrometry-mass spectrometry

scientific article published on October 2010

Development of aptamer therapeutics

scientific article published on 17 July 2010

Development of smart nanoparticle-aptamer sensing technology

scientific article published in January 2011

Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2 ⬇️

scientific article published on 19 November 2015

Directed surface attachment of nanomaterials via coiled-coil-driven self-assembly

scientific article

Dissecting the molecular details of prokaryotic transcriptional control by surface plasmon resonance: the methionine and arginine repressor proteins.

scientific article published in September 1998

Distinguishing closely related amyloid precursors using an RNA aptamer ⬇️

scientific article published on 06 August 2014

Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies ⬇️

scientific article published on 19 February 2014

Dynamic allostery controls coat protein conformer switching during MS2 phage assembly.

scientific article published on 12 November 2009

Effects of amino acid substitution on the thermal stability of MS2 capsids lacking genomic RNA

scientific article published on 01 November 1993

Effects of systematic variation of the minimal Escherichia coli met consensus operator site: in vivo and in vitromet repressor binding

scientific article published on 01 September 1996

Emerging Topics in Physical Virology

scholarly article by Peter Stockley published in March 2010

Engineering thermal stability in RNA phage capsids via disulphide bonds

scientific article published on December 2005

Erratum to “Development of aptamer therapeutics” [Curr. Opin. Pharmacol. 10 (2010) 557–562]

article

Erratum: Genomic RNA folding mediates assembly of human parechovirus

scientific article published on 14 July 2017

Ethylation interference footprinting of DNA-protein complexes

scientific article published in January 2009

Evidence that avian reovirus σNS is an RNA chaperone: implications for genome segment assortment ⬇️

scientific article published on 24 June 2015

Evidence that viral RNAs have evolved for efficient, two-stage packaging

scientific article

Expanding the repertoire of amyloid polymorphs by co-polymerization of related protein precursors

scientific article published on 17 January 2013

Fabrication and characterization of gold nano-wires templated on virus-like arrays of tobacco mosaic virus coat proteins. ⬇️

scientific article

Filter-binding assays

scientific article published in January 2009

Four-probe electrical characterization of Pt-coated TMV-based nanostructures ⬇️

scientific article published on March 20, 2008

Generation of neutralizing aptamers against herpes simplex virus type 2: potential components of multivalent microbicides.

scientific article

Genomic RNA folding mediates assembly of human parechovirus ⬇️

scientific article

Hamiltonian path analysis of viral genomes. ⬇️

scientific article

Hyperreactivity of adenines and conformational flexibility of a translational repression site ⬇️

scientific article published on May 20, 1991

Identification of novel RNA secondary structures within the hepatitis C virus genome reveals a cooperative involvement in genome packaging ⬇️

scientific article

Identification of stable S-adenosylmethionine (SAM) analogues derivatised with bioorthogonal tags: effect of ligands on the affinity of the E. coli methionine repressor, MetJ, for its operator DNA. ⬇️

scientific article published on 19 December 2008

Insights into virus capsid assembly from non-covalent mass spectrometry

scientific article

Investigating the structural basis of purine specificity in the structures of MS2 coat protein RNA translational operator hairpins

scientific article

Isolation of an Asymmetric RNA Uncoating Intermediate for a Single-Stranded RNA Plant Virus

scientific article

Kinetic analysis of operator binding by the E. coli methionine repressor highlights the role(s) of electrostatic interactions

scientific article published in April 2004

Limits of Structural Plasticity in a Picornavirus Capsid Revealed by a Massively Expanded Equine Rhinitis A Virus Particle ⬇️

scientific article

MS2 viruslike particles: a robust, semisynthetic targeted drug delivery platform

scientific article

Mapping ATP-dependent activation at a sigma54 promoter

scientific article published on 22 August 2006

Mathematical Virology

scholarly article by Thomas Charles Buckland McLeish published in January 2005

Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor

scientific article published on 04 March 2008

Multiple presentation of foreign peptides on the surface of an RNA-free spherical bacteriophage capsid

scientific article published on 01 April 1993

Mutations in RNA Polymerase Bridge Helix and Switch Regions Affect Active-Site Networks and Transcript-Assisted Hydrolysis ⬇️

scientific article published on 10 September 2015

Mutually-induced conformational switching of RNA and coat protein underpins efficient assembly of a viral capsid

scientific article

New Insights into the Interaction of Ribosomal Protein L1 with RNA

scientific article published on 17 November 2005

New tertiary constraints between the RNA components of active yeast spliceosomes: a photo-crosslinking study

scientific article

On-surface assembly of coiled-coil heterodimers

scientific article

Oncogene dependency and the potential of targeted RNAi-based anti-cancer therapy ⬇️

scientific article

Packaging signals in single-stranded RNA viruses: nature's alternative to a purely electrostatic assembly mechanism ⬇️

scientific article published on March 2013

Packaging signals in two single-stranded RNA viruses imply a conserved assembly mechanism and geometry of the packaged genome

scientific article published on 11 June 2013

Probing Activation of the Prokaryotic Arginine Transcriptional Regulator Using Chimeric Proteins

scientific article published on 01 June 1999

Probing sequence-specific RNA recognition by the bacteriophage MS2 coat protein.

scientific article published on July 1995

Probing the details of the HIV-1 Rev-Rev-responsive element interaction: effects of modified nucleotides on protein affinity and conformational changes during complex formation

scientific article published on June 1995

Probing the kinetics of formation of the bacteriophage MS2 translational operator complex: identification of a protein conformer unable to bind RNA.

scientific article

Probing the molecular mechanism of action of co-repressor in the E. coli methionine repressor-operator complex using surface plasmon resonance (SPR).

scientific article

Production and Characterization of RNA Aptamers Specific for Amyloid Fibril Epitopes

scientific article published in October 2007

Purification and initial characterization of AhrC: the regulator of arginine metabolism genes in Bacillus subtilis

scientific article published on January 1, 1992

Quantitation of theEscherichia coliMethionine Repressor–Operator Interaction by Surface Plasmon Resonance Is Not Affected by the Presence of a Dextran Matrix ⬇️

scientific article published on December 1, 1997

RNA Bacteriophage Capsid-Mediated Drug Delivery and Epitope Presentation

scientific article published on 01 January 2002

RNA-induced conformational changes in a viral coat protein studied by hydrogen/deuterium exchange mass spectrometry

scientific article published on 28 September 2010

Regulation of methionine biosynthesis in the enterobacteriaceae ⬇️

scientific article published on January 1, 1991

Revealing the density of encoded functions in a viral RNA

scientific article

Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions ⬇️

scientific article published in December 2015

Rewriting nature's assembly manual for a ssRNA virus ⬇️

scientific article published on 30 October 2017

Ribosome-mediated folding of partially unfolded ricin A-chain.

scientific article published in March 2000

Scanning conformational space with a library of stereo- and regiochemically diverse aminoglycoside derivatives: the discovery of new ligands for RNA hairpin sequences

scientific article

Secondary Structure Mapping of an RNA Ligand That Has High Affinity for the MetJ Repressor Protein and Interference Modification Analysis of the Protein-RNA Complex

scientific article published in Journal of Biological Chemistry

Selection of 2'F-modified RNA aptamers against prostate-specific antigen and their evaluation for diagnostic and therapeutic applications

scientific article published on 17 September 2013

Sequence-Specific, RNA–Protein Interactions Overcome Electrostatic Barriers Preventing Assembly of Satellite Tobacco Necrosis Virus Coat Protein

scientific article

Simple rules for efficient assembly predict the layout of a packaged viral RNA.

scientific article published on 25 February 2011

Single-molecule fluorescence resonance energy transfer assays reveal heterogeneous folding ensembles in a simple RNA stem-loop

scientific article

Solving a Levinthal's paradox for virus assembly identifies a unique antiviral strategy

scientific article published on 24 March 2014

Structural and functional studies of an intermediate on the pathway to operator binding by Escherichia coli MetJ.

scientific article

Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2.

scientific article published in March 2006

Structural constraints on the three-dimensional geometry of simple viruses: case studies of a new predictive tool

scientific article published on 8 January 2013

Structural insights into the polymorphism of amyloid-like fibrils formed by region 20-29 of amylin revealed by solid-state NMR and X-ray fiber diffraction

scientific article

Structure and function of the arginine repressor-operator complex from Bacillus subtilis

scientific article

Structure of the C-terminal effector-binding domain of AhrC bound to its corepressorL-arginine

scientific article

Surface plasmon resonance assays of DNA-protein interactions

scientific article

Synthesis of a library of stereo- and regiochemically diverse aminoglycoside derivatives

scientific article published on 23 June 2005

Synthesis, molecular structure and evaluation of new organometallic ruthenium anticancer agents

scientific article

The Asymmetric Structure of an Icosahedral Virus Bound to Its Receptor Suggests a Mechanism for Genome Release ⬇️

scientific article

The Organization of Aromatic Side Groups in an Amyloid Fibril Probed by Solid-State2H and19F NMR Spectroscopy

scientific article published in June 2006

The crystal structure of a high affinity RNA stem-loop complexed with the bacteriophage MS2 capsid: further challenges in the modeling of ligand-RNA interactions

scientific article published on November 2004

The impact of viral RNA on assembly pathway selection

scientific article published in June 2010

The influence of two-dimensional organization on peptide conformation ⬇️

scientific article published on 20 November 2014

The physics of virus assembly ⬇️

scientific article published on December 9, 2010

The three-dimensional structure of genomic RNA in bacteriophage MS2: implications for assembly

scientific article published on 07 September 2007

Toggled RNA aptamers against aminoglycosides allowing facile detection of antibiotics using gold nanoparticle assays

scientific article published on 25 July 2012

Transcript analysis reveals an extended regulon and the importance of protein-protein co-operativity for the Escherichia coli methionine repressor

scientific article published on June 2006

Trivalent Gd-DOTA reagents for modification of proteins ⬇️

scientific article

Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex ⬇️

scientific article published on June 25, 1990

Viral genomic single-stranded RNA directs the pathway toward a T=3 capsid

scientific article

Visualising a viral RNA genome poised for release from its receptor complex

scientific article published on 2 March 2011

Visualizing the organization and reorganization of transcription complexes for gene expression.

scientific article

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