List of works by Henry Lam

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

scientific article

A database of mass spectrometric assays for the yeast proteome

scientific article

A draft map of the human proteome

scientific article (publication date: 29 May 2014)

A guided tour of the Trans-Proteomic Pipeline

scientific article

A high-resolution LC-MS-based secondary metabolite fingerprint database of marine bacteria

scientific article published on 9 October 2014

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

scientific article

A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries

scientific article

A ubiquitin and ubiquitin-like protein spectral library

scientific article

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

scientific article

Affinity-enhanced protein partitioning in decyl beta-D-glucopyranoside two-phase aqueous micellar systems

scientific article published in February 2005

Affinity-tagged green fluorescent protein (GFP) extraction from a clarified E. coli cell lysate using a two-phase aqueous micellar system

scientific article published in April 2006

Application of proteomics in studying bacterial persistence

scientific article published on 06 February 2019

Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics

scientific article

Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics

scientific article

Building and searching tandem mass spectral libraries for peptide identification

scientific article

Building consensus spectral libraries for peptide identification in proteomics

scientific article

Chemical changes of Angelicae Sinensis Radix and Chuanxiong Rhizoma by wine treatment: chemical profiling and marker selection by gas chromatography coupled with triple quadrupole mass spectrometry

scientific article

ClusterSheep: A Graphics Processing Unit-Accelerated Software Tool for Large-Scale Clustering of Tandem Mass Spectra from Shotgun Proteomics

scientific article published on 04 November 2021

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics

scientific article

Denoising peptide tandem mass spectra for spectral libraries: a Bayesian approach

scientific article

Development and validation of a spectral library searching method for peptide identification from MS/MS.

scientific article

Elasnin Effectively Eradicates Daptomycin-Resistant Methicillin-Resistant Staphylococcus aureus Biofilms

scientific article published on 23 February 2022

Expanding tandem mass spectral libraries of phosphorylated peptides: advances and applications

scientific article

Fast parallel tandem mass spectral library searching using GPU hardware acceleration

scientific article

Glucose-6-phosphate dehydrogenase partitioning in two-phase aqueous mixed (nonionic/cationic) micellar systems

scientific article published in May 2003

Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets

scientific article published on 30 July 2013

Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring

scientific article

Identifying sources of tick blood meals using unidentified tandem mass spectral libraries

scientific article

In Vitro Salivary Protein Adsorption Profile on Titanium and Ceramic Surfaces and the Corresponding Putative Immunological Implications

scientific article published on 27 April 2020

Label-free quantitative proteomics analysis of antibiotic response in Staphylococcus aureus to oxacillin

scientific article published on 20 February 2014

MaRiMba: a software application for spectral library-based MRM transition list assembly

scientific article

Metabonomic analysis of water extracts from Chinese and American ginsengs by 1H nuclear magnetic resonance: identification of chemical profile for quality control.

scientific article

Metabonomic analysis of water extracts from different angelica roots by ¹H-nuclear magnetic resonance spectroscopy.

scientific article

Novel Daptomycin Tolerance and Resistance Mutations in Methicillin-Resistant Staphylococcus aureus from Adaptive Laboratory Evolution

scientific article published in 2021

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

scientific article published on May 2008

PhosphoPep--a database of protein phosphorylation sites in model organisms

scientific article published on December 2008

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

scientific article

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

scientific article

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

scientific article published on 31 October 2013

Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment

scientific article published on 28 July 2020

Proteomic analysis of thioproline misincorporation in Escherichia coli

scientific article published on 13 October 2019

Proteomics Study of DNA-Protein Crosslinks in Methylmethanesulfonate and Fe2+-EDTA-Exposed Human Cells

scientific article published on 26 October 2020

Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus

scientific article published on 25 January 2022

Quality Control of Danggui Buxue Tang, a Traditional Chinese Medicine Decoction, by (1)H-NMR Metabolic Profiling.

scientific article

Quantitative Proteomics Reveals UGA-Independent Misincorporation of Selenocysteine throughout the <i>Escherichia coli</i> Proteome

scientific article published on 30 November 2020

Refining similarity scoring to enable decoy-free validation in spectral library searching

scientific article

Spectral archives: a vision for future proteomics data repositories

scientific article published on 29 June 2011

Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.

scientific article published on 16 September 2013

Tracking the sources of blood meals of parasitic arthropods using shotgun proteomics and unidentified tandem mass spectral libraries

scientific article

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

scientific article

Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis

scientific article

Universal Spectrum Identifier for mass spectra

scientific article published on 28 June 2021

Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data

scientific article

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

scientific article

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