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List of works by Bohdan Schneider

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.

scientific article published on 18 October 2017

A DNA structural alphabet provides new insight into DNA flexibility

scientific article

A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank

scientific article

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

scientific article published on 22 April 2020

A short survey on protein blocks.

scientific article

A systematic method for studying the spatial distribution of water molecules around nucleic acid bases

scientific article

A unified dinucleotide alphabet describing both RNA and DNA structures

scientific article published on 14 May 2020

Automatic workflow for the classification of local DNA conformations

scientific article

Bioinformatic analysis of the protein/DNA interface.

scientific article published on 11 December 2013

Building of RNA and DNA double helices into electron density

scientific article published on 14 May 2008

Calculating the response of NMR shielding tensor σ(31P) and 2J(31P,13C) coupling constants in nucleic acid phosphate to coordination of the Mg2+ cation

scientific article

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies

scientific article published on 31 July 2013

Charge transport in DNA oligonucleotides with various base-pairing patterns

scientific article published on 01 April 2010

Conductivity of natural and modified DNA measured by scanning tunneling microscopy. The effect of sequence, charge and stacking

scientific article published on 28 August 2008

Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases

scientific article published on October 2015

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

scientific article

Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers

scientific article

DNA conformations and their sequence preferences.

scientific article published on 13 May 2008

DNATCO: assignment of DNA conformers at dnatco.org.

scientific article published on 05 May 2016

Discriminative interactions between chiral molecules: internal discrimination in 1,2-difluorohydrazine

Draft Genome Sequence of Stenotrophomonas maltophilia Strain 5BA-I-2, a Soil Isolate and a Member of a Phylogenetically Basal Lineage

scientific article published on 6 March 2014

Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides

scientific article

Evolution of REP diversity: a comparative study

scientific article

Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1

scientific article published on 12 June 2019

Geometry of the Phosphate Group and Its Interactions with Metal Cations in Crystals andab InitioCalculations

scientific article published in 1996

Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells

scientific article

Hydration of DNA bases: analysis of crystallographic data

scientific article published on July 1, 1992

Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.

scientific article

Hydration of the DNA bases is local

scientific article

Increasing affinity of interferon-γ receptor 1 to interferon-γ by computer-aided design.

scientific article published on 2 October 2013

Indirect NMR Spin−Spin Coupling Constants3J(P,C) and2J(P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

scientific article published in May 2006

Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function

scientific article published on 06 May 2018

Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids

scientific article

Local dynamics of proteins and DNA evaluated from crystallographic B factors

scientific article

Low temperature structures of dCpG-proflavine. Conformational and hydration effects

scientific article

MP4 Interaction energies and basis set superposition errors for the (H2)2dimer

Monitoring RAYT activity by surface plasmon resonance biosensor

scientific article published on 31 January 2015

Potential energy surface of the (H2)2 dimer: an MP2 study

Protein and drug interactions in the minor groove of DNA.

scientific article published on March 2002

Protein flexibility in the light of structural alphabets

scientific article

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

scientific article

Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model

scientific article published on 28 April 2015

Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

scientific article published on 17 August 2020

Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches

scientific article published on 24 November 2020

Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings.

scientific article published in January 2009

Structure of a platinum(II) complex of levamisole

scientific article published on 01 July 1993

Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition

scientific article

Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.

scientific article

Sugar pucker modulates the cross-correlated relaxation rates across the glycosidic bond in DNA.

scientific article published in October 2005

The PDB data uniformity project

scientific article

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.

scientific article

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations

scientific article

When will RNA get its AlphaFold moment?

scientific article published on 13 September 2023

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