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List of works by Aurélie Bonin

A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection

scientific article

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions

scientific article published on 03 July 2019

A road map for molecular ecology

scientific article published on May 2013

A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation.

scientific article published on September 2007

Allele identification for transcriptome-based population genomics in the invasive plant Centaurea solstitialis ⬇️

scientific article

Allele identification in assembled genomic sequence datasets.

scientific article

Body size determines soil community assembly in a tropical forest

scientific article published on 22 November 2018

Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations

scientific article (publication date: 21 November 2009)

Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito

scientific article

Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegypti using mRNA sequencing

scientific article

Conserving adaptive genetic diversity in dynamic landscapes ⬇️

scientific article published on April 1, 2011

Contrasting nuclear and cytoplasmic exchanges between phylogenetically distant oak species (Quercus suber L. and Q. ilex L.) in Southern France: inferring crosses and dynamics

scientific article published in March 2009

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

scientific article published on 29 April 2019

Effect of DNA extraction and sample preservation method on rumen bacterial population.

scientific article

Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers

scientific article (publication date: May 2011)

Explorative Genome Scan to Detect Candidate Loci for Adaptation Along a Gradient of Altitude in the Common Frog (Rana temporaria)

article

Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins

scientific article

Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment.

scientific article published on 14 December 2009

Genotyping errors: causes, consequences and solutions

scientific article

How to track and assess genotyping errors in population genetics studies.

scientific article

Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence

scientific article

Metabarcoding data reveal vertical multitaxa variation in topsoil communities during the colonization of deglaciated forelands

scientific article published in 2022

Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: testing different combinations of markers and strategies of data filtering

scientific article published on 04 November 2020

Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community

scientific article

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

scientific article

Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation

scientific article

Population genetics reveals origin and number of founders in a biological invasion

scientific article published on 8 January 2008

Population genomics: a new generation of genome scans to bridge the gap with functional genomics

scientific article published on 3 July 2008

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

scientific article

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System

scientific article

Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection

scientific article

Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists.

scientific article

The Retreat of Mountain Glaciers since the Little Ice Age: A Spatially Explicit Database

scientific article published in 2021

The development of terrestrial ecosystems emerging after glacier retreat

scientific article published on 31 July 2024

The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti

scientific article published on August 2015

Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity.

scientific article

obitools: a unix-inspired software package for DNA metabarcoding

scientific article published on 9 May 2015

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