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List of works by Yannick Bomble

Applications of computational science for understanding enzymatic deconstruction of cellulose

scientific article published on 17 December 2010

Bayesian inference of metabolic kinetics from genome-scale multiomics data

scientific article published on 04 November 2019

Cofactor Specificity of the Bifunctional Alcohol and Aldehyde Dehydrogenase (AdhE) in Wild-Type and Mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum

scientific article published on 26 May 2015

Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms

scientific article

Coupled-cluster methods including noniterative corrections for quadruple excitations

scientific article published on 01 August 2005

Deletion of Caldicellulosiruptor bescii CelA reveals its crucial role in the deconstruction of lignocellulosic biomass

scientific article

Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities.

scientific article published on 5 February 2016

Engineering the N-terminal end of CelA results in improved performance and growth of Caldicellulosiruptor bescii on crystalline cellulose

scientific article published on 26 December 2016

Equation-of-motion coupled-cluster methods for ionized states with an approximate treatment of triple excitations.

scientific article published in April 2005

Experimental and modeling studies of an unusual water-filled pore structure with possible mechanistic implications in family 48 cellulases.

scientific article

Expression of the Acidothermus cellulolyticus E1 endoglucanase in Caldicellulosiruptor bescii enhances its ability to deconstruct crystalline cellulose.

scientific article

Factors Contributing to the Accuracy of Harmonic Force Field Calculations for Water

scientific article published in July 2007

Glycosylation of hyperthermostable designer cellulosome components yields enhanced stability and cellulose hydrolysis

scientific article published on 17 February 2020

Heterologous expression of family 10 xylanases from Acidothermus cellulolyticus enhances the exoproteome of Caldicellulosiruptor bescii and growth on xylan substrates

scientific article published on 22 August 2016

High activity CAZyme cassette for improving biomass degradation in thermophiles

scientific article published in February 2018

High-accuracy extrapolated ab initio thermochemistry. II. Minor improvements to the protocol and a vital simplification

scientific article published in August 2006

Homologous expression of the Caldicellulosiruptor bescii CelA reveals that the extracellular protein is glycosylated

scientific article

Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase

scientific article published in January 2010

Improving activity of minicellulosomes by integration of intra- and intermolecular synergies.

scientific article published on 30 August 2013

Modeling the self-assembly of the cellulosome enzyme complex

scientific article

Molecular dynamics simulations of the interaction of glucose with imidazole in aqueous solution

scientific article published on 16 December 2011

Molecular-level origins of biomass recalcitrance: decrystallization free energies for four common cellulose polymorphs

scientific article published on 22 March 2011

Multifunctional Cellulolytic Enzymes Outperform Processive Fungal Cellulases for Coproduction of Nanocellulose and Biofuels

scientific article published on 7 March 2017

Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation

scientific article

Multiscale modeling of nucleic acids: insights into DNA flexibility

scientific article published on September 2008

Natural diversity of glycoside hydrolase family 48 exoglucanases: insights from structure

scientific article published on 30 November 2017

New perspective on glycoside hydrolase binding to lignin from pretreated corn stover

scientific article

On the vertical excitation energy of cyclopentadiene

scientific article published in September 2004

Predicting enzyme adsorption to lignin films by calculating enzyme surface hydrophobicity

scientific article

Prediction of reaction knockouts to maximize succinate production by Actinobacillus succinogenes

scientific article published on 30 January 2018

Response to Comment on "Revealing nature's cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA"

scientific article published on 01 May 2014

Revealing nature's cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA

scientific article

Selective One-Dimensional 13C-13C Spin-Diffusion Solid-State Nuclear Magnetic Resonance Methods to Probe Spatial Arrangements in Biopolymers Including Plant Cell Walls, Peptides, and Spider Silk

scientific article published on 22 October 2020

Strategies to reduce end-product inhibition in family 48 glycoside hydrolases

scientific article

Structure and function of the Clostridium thermocellum cellobiohydrolase A X1-module repeat: enhancement through stabilization of the CbhA complex

scientific article

Structure of a Thermobifida fusca lytic polysaccharide monooxygenase and mutagenesis of key residues

scientific article

The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein

scientific article

The catalytic mechanism and unique low pH optimum of Caldicellulosiruptor bescii family 3 pectate lyase

scientific article

The energy landscape for the interaction of the family 1 carbohydrate-binding module and the cellulose surface is altered by hydrolyzed glycosidic bonds.

scientific article published in August 2009

The unique binding mode of cellulosomal CBM4 from Clostridium thermocellum cellobiohydrolase A

scientific article

Thermochemistry of key soot formation intermediates: C3H3 isomers

scientific article published on 03 April 2007

Threshold detection using indicator-displacement assays: an application in the analysis of malate in Pinot Noir grapes.

scientific article